Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 86669 | 0.66 | 0.680996 |
Target: 5'- --cGGCgGCCGUGA-GGCCG-CGGc- -3' miRNA: 3'- cuaCCGgCGGCGCUgCCGGCuGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 87554 | 0.66 | 0.690738 |
Target: 5'- ---cGCCaaGCgCGCGACGGCCGAgagcuccaGAUGg -3' miRNA: 3'- cuacCGG--CG-GCGCUGCCGGCUg-------CUAC- -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 89269 | 0.74 | 0.270897 |
Target: 5'- -cUGGCU-CCGCGAgGGCCGGCGGg- -3' miRNA: 3'- cuACCGGcGGCGCUgCCGGCUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 89582 | 0.69 | 0.506161 |
Target: 5'- --cGGCCGggcuuauggaCCGcCGGCGGCCGACa--- -3' miRNA: 3'- cuaCCGGC----------GGC-GCUGCCGGCUGcuac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 91005 | 0.67 | 0.661411 |
Target: 5'- --gGGCgGgCGCGACGG-CGGCGGc- -3' miRNA: 3'- cuaCCGgCgGCGCUGCCgGCUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 93993 | 0.67 | 0.631886 |
Target: 5'- aGAUcGG-CGCCGCGAgaUGGCCGcccCGGUGu -3' miRNA: 3'- -CUA-CCgGCGGCGCU--GCCGGCu--GCUAC- -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 95035 | 0.73 | 0.309965 |
Target: 5'- --aGGagaCCGCCGCGGUGGCCGugGAa- -3' miRNA: 3'- cuaCC---GGCGGCGCUGCCGGCugCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 96607 | 0.67 | 0.641737 |
Target: 5'- ---aGCCGCCGCGccccGCCGGCGAc- -3' miRNA: 3'- cuacCGGCGGCGCugc-CGGCUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 100321 | 0.66 | 0.690738 |
Target: 5'- --gGGgCGCgGC-AUGGCCGGCGAc- -3' miRNA: 3'- cuaCCgGCGgCGcUGCCGGCUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 103804 | 0.76 | 0.209686 |
Target: 5'- gGcgGcGCCGCCGCGGCGG-CGACGGg- -3' miRNA: 3'- -CuaC-CGGCGGCGCUGCCgGCUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 107033 | 0.7 | 0.451636 |
Target: 5'- -uUGGCCGcCCGCGG-GGCCG-CGGg- -3' miRNA: 3'- cuACCGGC-GGCGCUgCCGGCuGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 117758 | 0.67 | 0.631886 |
Target: 5'- cGUGG-CGUgGCGACGGCCGAg---- -3' miRNA: 3'- cUACCgGCGgCGCUGCCGGCUgcuac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 118743 | 0.67 | 0.651581 |
Target: 5'- -cUGGCgGCCGCGGgaauccccUGGCCGcccUGAUGc -3' miRNA: 3'- cuACCGgCGGCGCU--------GCCGGCu--GCUAC- -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 119747 | 0.72 | 0.3685 |
Target: 5'- -cUGGCCgGCgGCGACGGCCGGa---- -3' miRNA: 3'- cuACCGG-CGgCGCUGCCGGCUgcuac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 122872 | 0.71 | 0.434181 |
Target: 5'- ---aGCCGCCGCGccACGGCCGA-GAa- -3' miRNA: 3'- cuacCGGCGGCGC--UGCCGGCUgCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 125856 | 0.7 | 0.44286 |
Target: 5'- --cGGCCGCCGCGGacGCCGugGc-- -3' miRNA: 3'- cuaCCGGCGGCGCUgcCGGCugCuac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 126124 | 0.67 | 0.641737 |
Target: 5'- --gGGCCGCgCGgaCGACGG-CGGCGAg- -3' miRNA: 3'- cuaCCGGCG-GC--GCUGCCgGCUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 127753 | 0.68 | 0.602362 |
Target: 5'- gGcgGGCUGCCgggugcgggccuGUGGCGGCCGucucGCGAUc -3' miRNA: 3'- -CuaCCGGCGG------------CGCUGCCGGC----UGCUAc -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 128038 | 0.66 | 0.670239 |
Target: 5'- --aGGCCGacgaugcCCGUGGCGGCC-ACGGc- -3' miRNA: 3'- cuaCCGGC-------GGCGCUGCCGGcUGCUac -5' |
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5803 | 3' | -61.1 | NC_001806.1 | + | 130500 | 0.66 | 0.710076 |
Target: 5'- --aGGCCGCCGaGACGGagGA-GGUGg -3' miRNA: 3'- cuaCCGGCGGCgCUGCCggCUgCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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