miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 128038 0.66 0.670239
Target:  5'- --aGGCCGacgaugcCCGUGGCGGCC-ACGGc- -3'
miRNA:   3'- cuaCCGGC-------GGCGCUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 127753 0.68 0.602362
Target:  5'- gGcgGGCUGCCgggugcgggccuGUGGCGGCCGucucGCGAUc -3'
miRNA:   3'- -CuaCCGGCGG------------CGCUGCCGGC----UGCUAc -5'
5803 3' -61.1 NC_001806.1 + 126124 0.67 0.641737
Target:  5'- --gGGCCGCgCGgaCGACGG-CGGCGAg- -3'
miRNA:   3'- cuaCCGGCG-GC--GCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 125856 0.7 0.44286
Target:  5'- --cGGCCGCCGCGGacGCCGugGc-- -3'
miRNA:   3'- cuaCCGGCGGCGCUgcCGGCugCuac -5'
5803 3' -61.1 NC_001806.1 + 122872 0.71 0.434181
Target:  5'- ---aGCCGCCGCGccACGGCCGA-GAa- -3'
miRNA:   3'- cuacCGGCGGCGC--UGCCGGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 119747 0.72 0.3685
Target:  5'- -cUGGCCgGCgGCGACGGCCGGa---- -3'
miRNA:   3'- cuACCGG-CGgCGCUGCCGGCUgcuac -5'
5803 3' -61.1 NC_001806.1 + 118743 0.67 0.651581
Target:  5'- -cUGGCgGCCGCGGgaauccccUGGCCGcccUGAUGc -3'
miRNA:   3'- cuACCGgCGGCGCU--------GCCGGCu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 117758 0.67 0.631886
Target:  5'- cGUGG-CGUgGCGACGGCCGAg---- -3'
miRNA:   3'- cUACCgGCGgCGCUGCCGGCUgcuac -5'
5803 3' -61.1 NC_001806.1 + 107033 0.7 0.451636
Target:  5'- -uUGGCCGcCCGCGG-GGCCG-CGGg- -3'
miRNA:   3'- cuACCGGC-GGCGCUgCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 103804 0.76 0.209686
Target:  5'- gGcgGcGCCGCCGCGGCGG-CGACGGg- -3'
miRNA:   3'- -CuaC-CGGCGGCGCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 100321 0.66 0.690738
Target:  5'- --gGGgCGCgGC-AUGGCCGGCGAc- -3'
miRNA:   3'- cuaCCgGCGgCGcUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 96607 0.67 0.641737
Target:  5'- ---aGCCGCCGCGccccGCCGGCGAc- -3'
miRNA:   3'- cuacCGGCGGCGCugc-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 95035 0.73 0.309965
Target:  5'- --aGGagaCCGCCGCGGUGGCCGugGAa- -3'
miRNA:   3'- cuaCC---GGCGGCGCUGCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 93993 0.67 0.631886
Target:  5'- aGAUcGG-CGCCGCGAgaUGGCCGcccCGGUGu -3'
miRNA:   3'- -CUA-CCgGCGGCGCU--GCCGGCu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 91005 0.67 0.661411
Target:  5'- --gGGCgGgCGCGACGG-CGGCGGc- -3'
miRNA:   3'- cuaCCGgCgGCGCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 89582 0.69 0.506161
Target:  5'- --cGGCCGggcuuauggaCCGcCGGCGGCCGACa--- -3'
miRNA:   3'- cuaCCGGC----------GGC-GCUGCCGGCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 89269 0.74 0.270897
Target:  5'- -cUGGCU-CCGCGAgGGCCGGCGGg- -3'
miRNA:   3'- cuACCGGcGGCGCUgCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 87554 0.66 0.690738
Target:  5'- ---cGCCaaGCgCGCGACGGCCGAgagcuccaGAUGg -3'
miRNA:   3'- cuacCGG--CG-GCGCUGCCGGCUg-------CUAC- -5'
5803 3' -61.1 NC_001806.1 + 86669 0.66 0.680996
Target:  5'- --cGGCgGCCGUGA-GGCCG-CGGc- -3'
miRNA:   3'- cuaCCGgCGGCGCUgCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 86396 0.66 0.690738
Target:  5'- --cGGCUaaCGCGGCGGCCgcuccggaGACGGUa -3'
miRNA:   3'- cuaCCGGcgGCGCUGCCGG--------CUGCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.