miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 42233 0.71 0.417125
Target:  5'- --cGGCCGCCGCGGCcccGCgGGCGuacUGg -3'
miRNA:   3'- cuaCCGGCGGCGCUGc--CGgCUGCu--AC- -5'
5803 3' -61.1 NC_001806.1 + 41600 0.66 0.719657
Target:  5'- --cGGauaagCGCCGCGAUcGCCGGgGGUGu -3'
miRNA:   3'- cuaCCg----GCGGCGCUGcCGGCUgCUAC- -5'
5803 3' -61.1 NC_001806.1 + 41444 0.7 0.469467
Target:  5'- gGGUGcGCCGCCGCuuCGGCgGACa--- -3'
miRNA:   3'- -CUAC-CGGCGGCGcuGCCGgCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 41229 0.69 0.524964
Target:  5'- aGUGGCCcaggGCCuCGugGaGCCGGCGAa- -3'
miRNA:   3'- cUACCGG----CGGcGCugC-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 38387 0.66 0.719657
Target:  5'- --aGGUCGUCGCGGCGGCucucCGcCGGc- -3'
miRNA:   3'- cuaCCGGCGGCGCUGCCG----GCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 34532 0.68 0.606292
Target:  5'- cGcgGGCCgggccgcucguaagaGCCGCGAccCGGCCGcCGggGa -3'
miRNA:   3'- -CuaCCGG---------------CGGCGCU--GCCGGCuGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 33783 0.75 0.253479
Target:  5'- --cGGCCGCCGUGuucggucucgguagcCGGCCGGCGGg- -3'
miRNA:   3'- cuaCCGGCGGCGCu--------------GCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 33762 0.71 0.425602
Target:  5'- --cGGCgGCUGCGGCGGCUG-CGGn- -3'
miRNA:   3'- cuaCCGgCGGCGCUGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 33000 0.7 0.469467
Target:  5'- --gGGCCGCCaCGGgGGCCGGCcguUGg -3'
miRNA:   3'- cuaCCGGCGGcGCUgCCGGCUGcu-AC- -5'
5803 3' -61.1 NC_001806.1 + 29456 0.7 0.487651
Target:  5'- --aGGCCGUCaggGCGggcACGGCCGugGAc- -3'
miRNA:   3'- cuaCCGGCGG---CGC---UGCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 29104 0.66 0.710076
Target:  5'- --gGGCUGCUGgGGCcgcaGGgCGugGAUGg -3'
miRNA:   3'- cuaCCGGCGGCgCUG----CCgGCugCUAC- -5'
5803 3' -61.1 NC_001806.1 + 27283 0.67 0.661411
Target:  5'- --cGGCCGCCagcGCGGCGGggcCCGGCc--- -3'
miRNA:   3'- cuaCCGGCGG---CGCUGCC---GGCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 26968 0.71 0.417125
Target:  5'- -cUGGCgCGCCGCGGCucgugGGCCcGCGAg- -3'
miRNA:   3'- cuACCG-GCGGCGCUG-----CCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 24869 0.74 0.283462
Target:  5'- -cUGGCgGCgGCGGgGGCCGugGAg- -3'
miRNA:   3'- cuACCGgCGgCGCUgCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 24640 0.66 0.710076
Target:  5'- --gGGCgCGCCGCuGCGGCCcguguacguGGCGcUGg -3'
miRNA:   3'- cuaCCG-GCGGCGcUGCCGG---------CUGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 23749 0.75 0.241449
Target:  5'- --aGGCCGCgUGCGGCGGCggCGACGAc- -3'
miRNA:   3'- cuaCCGGCG-GCGCUGCCG--GCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23470 0.69 0.514588
Target:  5'- --gGGCCGCCGCGGCGcaggcccGCCcGCGccccGUGg -3'
miRNA:   3'- cuaCCGGCGGCGCUGC-------CGGcUGC----UAC- -5'
5803 3' -61.1 NC_001806.1 + 23316 0.75 0.230438
Target:  5'- --cGGCCGCCcggagGCGGCGGCCcGCGAc- -3'
miRNA:   3'- cuaCCGGCGG-----CGCUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23233 0.67 0.661411
Target:  5'- --cGGaCGCCGcCGACGcGCUGGCGGc- -3'
miRNA:   3'- cuaCCgGCGGC-GCUGC-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23068 0.71 0.425602
Target:  5'- --aGGCCGCCGUGGCcGCCGuGCGcgccGUGa -3'
miRNA:   3'- cuaCCGGCGGCGCUGcCGGC-UGC----UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.