miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 143122 0.69 0.524964
Target:  5'- cGUGGCUGCCGgGAgGGgCCG-CgGAUGg -3'
miRNA:   3'- cUACCGGCGGCgCUgCC-GGCuG-CUAC- -5'
5803 3' -61.1 NC_001806.1 + 72823 0.69 0.524964
Target:  5'- ----cCCGCCGCagaGGCGGCCGAagaaGAUGa -3'
miRNA:   3'- cuaccGGCGGCG---CUGCCGGCUg---CUAC- -5'
5803 3' -61.1 NC_001806.1 + 16488 0.69 0.534466
Target:  5'- gGggGGCuUGCCGCcGCGGCUGAUGGc- -3'
miRNA:   3'- -CuaCCG-GCGGCGcUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 4639 0.69 0.534466
Target:  5'- --cGGCCGugacgacgucuCCGCGGCggcugGGCCGGCGGg- -3'
miRNA:   3'- cuaCCGGC-----------GGCGCUG-----CCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 84229 0.68 0.552679
Target:  5'- uGAUGGCCaCCGUGcugaaacACGGCCGgggGCGcgGg -3'
miRNA:   3'- -CUACCGGcGGCGC-------UGCCGGC---UGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 1715 0.68 0.56331
Target:  5'- --aGGCCGCCGCc-CGGCCGuccaGCGccGg -3'
miRNA:   3'- cuaCCGGCGGCGcuGCCGGC----UGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 144283 0.7 0.469467
Target:  5'- uGUGGCCGCgggccaGCaGACGGCCcGCGAc- -3'
miRNA:   3'- cUACCGGCGg-----CG-CUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 41444 0.7 0.469467
Target:  5'- gGGUGcGCCGCCGCuuCGGCgGACa--- -3'
miRNA:   3'- -CUAC-CGGCGGCGcuGCCGgCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 122872 0.71 0.434181
Target:  5'- ---aGCCGCCGCGccACGGCCGA-GAa- -3'
miRNA:   3'- cuacCGGCGGCGC--UGCCGGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 130818 0.7 0.440246
Target:  5'- cAUGGCCGCgCGCcugcauugggacucGGCGGCCGGgGGa- -3'
miRNA:   3'- cUACCGGCG-GCG--------------CUGCCGGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 125856 0.7 0.44286
Target:  5'- --cGGCCGCCGCGGacGCCGugGc-- -3'
miRNA:   3'- cuaCCGGCGGCGCUgcCGGCugCuac -5'
5803 3' -61.1 NC_001806.1 + 150980 0.7 0.44286
Target:  5'- cGcgGGCCcacgaGCCGCGGCGcGCCaGGCGGg- -3'
miRNA:   3'- -CuaCCGG-----CGGCGCUGC-CGG-CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 3633 0.7 0.451636
Target:  5'- --cGGCgGCgGCGACGG-CGGCGAc- -3'
miRNA:   3'- cuaCCGgCGgCGCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 107033 0.7 0.451636
Target:  5'- -uUGGCCGcCCGCGG-GGCCG-CGGg- -3'
miRNA:   3'- cuACCGGC-GGCGCUgCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 136989 0.7 0.451636
Target:  5'- --cGGUCaUgGCGGCGGCCGGCGggGa -3'
miRNA:   3'- cuaCCGGcGgCGCUGCCGGCUGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 76284 0.7 0.460506
Target:  5'- -cUGGCCGCCGCcGCGGaggagauauCCG-CGGUGc -3'
miRNA:   3'- cuACCGGCGGCGcUGCC---------GGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 151554 0.7 0.460506
Target:  5'- --cGGCCggggGCgGCGGgGGCCG-CGAUGg -3'
miRNA:   3'- cuaCCGG----CGgCGCUgCCGGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 33000 0.7 0.469467
Target:  5'- --gGGCCGCCaCGGgGGCCGGCcguUGg -3'
miRNA:   3'- cuaCCGGCGGcGCUgCCGGCUGcu-AC- -5'
5803 3' -61.1 NC_001806.1 + 47554 0.68 0.56331
Target:  5'- --cGGCCacCCGCGACGGCCu-CGGg- -3'
miRNA:   3'- cuaCCGGc-GGCGCUGCCGGcuGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.