miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 73126 0.66 0.680996
Target:  5'- --cGGUCGCCGaGGCGGgCGAgGAc- -3'
miRNA:   3'- cuaCCGGCGGCgCUGCCgGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 42720 0.66 0.680996
Target:  5'- cGUGGCCuCCGCGuccAgGGUggCGGCGAUGu -3'
miRNA:   3'- cUACCGGcGGCGC---UgCCG--GCUGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 2653 0.66 0.680996
Target:  5'- --aGGCCuCCaggGCGGCGGCCG-CGGg- -3'
miRNA:   3'- cuaCCGGcGG---CGCUGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 133089 0.66 0.678067
Target:  5'- aAUGGCCGCCgucuGCcugcagaucgaggaGACGGCCagcuCGGUGa -3'
miRNA:   3'- cUACCGGCGG----CG--------------CUGCCGGcu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 76639 0.66 0.671218
Target:  5'- aGGUGGUCGCCgucccgGCGACcguGGCCaaGACGcUGg -3'
miRNA:   3'- -CUACCGGCGG------CGCUG---CCGG--CUGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 75183 0.66 0.671218
Target:  5'- ---cGCCGUCGCaACGGCagacccugcguCGACGGUGg -3'
miRNA:   3'- cuacCGGCGGCGcUGCCG-----------GCUGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 128038 0.66 0.670239
Target:  5'- --aGGCCGacgaugcCCGUGGCGGCC-ACGGc- -3'
miRNA:   3'- cuaCCGGC-------GGCGCUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23233 0.67 0.661411
Target:  5'- --cGGaCGCCGcCGACGcGCUGGCGGc- -3'
miRNA:   3'- cuaCCgGCGGC-GCUGC-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 21600 0.67 0.661411
Target:  5'- ---aGCCGCCGCGgagacgucgucACGGCCGgugGCGGc- -3'
miRNA:   3'- cuacCGGCGGCGC-----------UGCCGGC---UGCUac -5'
5803 3' -61.1 NC_001806.1 + 91005 0.67 0.661411
Target:  5'- --gGGCgGgCGCGACGG-CGGCGGc- -3'
miRNA:   3'- cuaCCGgCgGCGCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 54092 0.67 0.661411
Target:  5'- --aGGCCGCgGCGGgGaGCCGAgccCGcAUGg -3'
miRNA:   3'- cuaCCGGCGgCGCUgC-CGGCU---GC-UAC- -5'
5803 3' -61.1 NC_001806.1 + 27283 0.67 0.661411
Target:  5'- --cGGCCGCCagcGCGGCGGggcCCGGCc--- -3'
miRNA:   3'- cuaCCGGCGG---CGCUGCC---GGCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 144793 0.67 0.651581
Target:  5'- --gGGCgaagGCCGCGuACGGCCcggGACGAg- -3'
miRNA:   3'- cuaCCGg---CGGCGC-UGCCGG---CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 118743 0.67 0.651581
Target:  5'- -cUGGCgGCCGCGGgaauccccUGGCCGcccUGAUGc -3'
miRNA:   3'- cuACCGgCGGCGCU--------GCCGGCu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 70839 0.67 0.641737
Target:  5'- --cGGCCugcuaucaaGCCGCGgcGCGGCCG-CGGg- -3'
miRNA:   3'- cuaCCGG---------CGGCGC--UGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 96607 0.67 0.641737
Target:  5'- ---aGCCGCCGCGccccGCCGGCGAc- -3'
miRNA:   3'- cuacCGGCGGCGCugc-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 133235 0.67 0.641737
Target:  5'- gGcgGGCCaUCGaGACGGCCGugGGa- -3'
miRNA:   3'- -CuaCCGGcGGCgCUGCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 126124 0.67 0.641737
Target:  5'- --gGGCCGCgCGgaCGACGG-CGGCGAg- -3'
miRNA:   3'- cuaCCGGCG-GC--GCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 117758 0.67 0.631886
Target:  5'- cGUGG-CGUgGCGACGGCCGAg---- -3'
miRNA:   3'- cUACCgGCGgCGCUGCCGGCUgcuac -5'
5803 3' -61.1 NC_001806.1 + 50238 0.67 0.631886
Target:  5'- cGUGGCCGcCCGCuaugcCGGCCGcAUGAc- -3'
miRNA:   3'- cUACCGGC-GGCGcu---GCCGGC-UGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.