Results 81 - 83 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 63114 | 0.74 | 0.307847 |
Target: 5'- uCCaGCC-CCAgCUUCAGGCAGGCCGUg -3' miRNA: 3'- cGG-CGGuGGUaGGAGUUCGUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 119889 | 0.75 | 0.293943 |
Target: 5'- uCCGCUGCUGUCCUCGGcGCuGGCCAc -3' miRNA: 3'- cGGCGGUGGUAGGAGUU-CGuCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 97312 | 0.81 | 0.12332 |
Target: 5'- cGCCGCCgACCG-CUUCAAGCAGGUCGa -3' miRNA: 3'- -CGGCGG-UGGUaGGAGUUCGUCCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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