Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 27222 | 0.67 | 0.69333 |
Target: 5'- cGCUuggaGCCAgcCCGcCCUCAcagGGCGGGCCGc -3' miRNA: 3'- -CGG----CGGU--GGUaGGAGU---UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 43462 | 0.67 | 0.703375 |
Target: 5'- gGCgCGCCACCAcCC-CGGGUucgAGGCCc- -3' miRNA: 3'- -CG-GCGGUGGUaGGaGUUCG---UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 50928 | 0.67 | 0.703375 |
Target: 5'- cGCC-CCGCC-UCCUCAGcGCcccGGGCCc- -3' miRNA: 3'- -CGGcGGUGGuAGGAGUU-CG---UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 30490 | 0.66 | 0.752517 |
Target: 5'- uCCGCCGCC-UCUgUCGAGCAGGaggCGg -3' miRNA: 3'- cGGCGGUGGuAGG-AGUUCGUCCg--GUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 5919 | 0.66 | 0.762065 |
Target: 5'- uGCCGCCcccCCAUuggCCggCGGGCGGGaCCGc -3' miRNA: 3'- -CGGCGGu--GGUA---GGa-GUUCGUCC-GGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 144207 | 0.66 | 0.762065 |
Target: 5'- aGCCGCCGCCGacaCCgcaGAGCcGGCgCGc -3' miRNA: 3'- -CGGCGGUGGUa--GGag-UUCGuCCG-GUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3911 | 0.66 | 0.762065 |
Target: 5'- cGCgCGgCGCCcgagAUCCggAAGCAGGCCu- -3' miRNA: 3'- -CG-GCgGUGG----UAGGagUUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 33133 | 0.66 | 0.762065 |
Target: 5'- aCCGCCGCgGUcgggggccCCUCGuccCGGGCCGUa -3' miRNA: 3'- cGGCGGUGgUA--------GGAGUuc-GUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 54883 | 0.66 | 0.762065 |
Target: 5'- gGCCGCCGCag-CCUCGG--AGGUCAc -3' miRNA: 3'- -CGGCGGUGguaGGAGUUcgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 33349 | 0.66 | 0.771498 |
Target: 5'- gGCCGCC-CCggCUgCAGGgGGGCCc- -3' miRNA: 3'- -CGGCGGuGGuaGGaGUUCgUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 12784 | 0.66 | 0.752517 |
Target: 5'- uGCCGcCCACCGcgCCggCGAuCAGGCCc- -3' miRNA: 3'- -CGGC-GGUGGUa-GGa-GUUcGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 83508 | 0.66 | 0.742863 |
Target: 5'- cGCCGCUAgCAUCUUCGu---GGCCGc -3' miRNA: 3'- -CGGCGGUgGUAGGAGUucguCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 22818 | 0.66 | 0.742863 |
Target: 5'- gGCCGCCugCcgcgggAUCCUgGAggcGCuGGCCGa -3' miRNA: 3'- -CGGCGGugG------UAGGAgUU---CGuCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 8819 | 0.66 | 0.742863 |
Target: 5'- gGCCGCC-UCGUCUUCGcuuuccgaguAGUAGGCUu- -3' miRNA: 3'- -CGGCGGuGGUAGGAGU----------UCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4325 | 0.66 | 0.742863 |
Target: 5'- gGCCgGCCACCG-CCgc--GCGGGCCc- -3' miRNA: 3'- -CGG-CGGUGGUaGGaguuCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 1386 | 0.66 | 0.742863 |
Target: 5'- cGCCGCCGCCAgcacggugCCgcugcGGCccguGGCCGa -3' miRNA: 3'- -CGGCGGUGGUa-------GGagu--UCGu---CCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 80145 | 0.66 | 0.742863 |
Target: 5'- aGCCGaCC-UCAUCCUCucccGCAGGUCc- -3' miRNA: 3'- -CGGC-GGuGGUAGGAGuu--CGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 112112 | 0.66 | 0.739948 |
Target: 5'- aGCuCGCUcgcaacguccagGCCGUCCUCGgggcguuugagcgcGGCAcGGCCGa -3' miRNA: 3'- -CG-GCGG------------UGGUAGGAGU--------------UCGU-CCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 49432 | 0.66 | 0.733113 |
Target: 5'- uCC-CCGCgGUCCUCc-GCAGGCCc- -3' miRNA: 3'- cGGcGGUGgUAGGAGuuCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 94472 | 0.66 | 0.780808 |
Target: 5'- aCUGCCACCucaucacccCCUCGcGCGGcGCCAc -3' miRNA: 3'- cGGCGGUGGua-------GGAGUuCGUC-CGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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