Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 2016 | 0.68 | 0.662925 |
Target: 5'- uGCCGCgaCACCGcgggCC-CGucGGCGGGCCAg -3' miRNA: 3'- -CGGCG--GUGGUa---GGaGU--UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 23255 | 0.68 | 0.662925 |
Target: 5'- gGCCGCCGCCG-CCUCc-GCcGcGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGAGuuCGuC-CGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 81776 | 0.68 | 0.662925 |
Target: 5'- cCCGCCGCCAaaaCgagcgCGGGgGGGCCAa -3' miRNA: 3'- cGGCGGUGGUag-Ga----GUUCgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 138966 | 0.67 | 0.670048 |
Target: 5'- aCCGCCGCCGUUCacaccCAguuugcgcugcugaAGCGGGCCu- -3' miRNA: 3'- cGGCGGUGGUAGGa----GU--------------UCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 1286 | 0.67 | 0.673096 |
Target: 5'- cGCCGCCGUCGUCUUCGuccCAGGCg-- -3' miRNA: 3'- -CGGCGGUGGUAGGAGUuc-GUCCGgua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 22623 | 0.67 | 0.673096 |
Target: 5'- cGCCGCCGCCGcaCCgggCGAGCGcGCgGUg -3' miRNA: 3'- -CGGCGGUGGUa-GGa--GUUCGUcCGgUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 94835 | 0.67 | 0.682222 |
Target: 5'- cCCGUCGCCcgagaacgacucgGUCCgCAAGgAGGCCGa -3' miRNA: 3'- cGGCGGUGG-------------UAGGaGUUCgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 20102 | 0.67 | 0.683234 |
Target: 5'- gGCCGgCGCCGUCUgCGGGCgucggucgcgccGGGCCu- -3' miRNA: 3'- -CGGCgGUGGUAGGaGUUCG------------UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 77090 | 0.67 | 0.687278 |
Target: 5'- cCCGCCaaguACCAgggcgUCCUgggcgccaagagcgcCGAGCGGGCCGg -3' miRNA: 3'- cGGCGG----UGGU-----AGGA---------------GUUCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 27222 | 0.67 | 0.69333 |
Target: 5'- cGCUuggaGCCAgcCCGcCCUCAcagGGCGGGCCGc -3' miRNA: 3'- -CGG----CGGU--GGUaGGAGU---UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 43462 | 0.67 | 0.703375 |
Target: 5'- gGCgCGCCACCAcCC-CGGGUucgAGGCCc- -3' miRNA: 3'- -CG-GCGGUGGUaGGaGUUCG---UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 50928 | 0.67 | 0.703375 |
Target: 5'- cGCC-CCGCC-UCCUCAGcGCcccGGGCCc- -3' miRNA: 3'- -CGGcGGUGGuAGGAGUU-CG---UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 21816 | 0.67 | 0.707376 |
Target: 5'- cGCCGCC-CCcgCC-CGGGCcacccccccucuccgAGGCCGc -3' miRNA: 3'- -CGGCGGuGGuaGGaGUUCG---------------UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 75405 | 0.67 | 0.712364 |
Target: 5'- gGCUGCCGCCGaCCUugucgucCAGGUgcgccGGGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGA-------GUUCG-----UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 134842 | 0.67 | 0.713359 |
Target: 5'- gGUCGCCgACCuggcgcaCCUC--GCAGGCCAg -3' miRNA: 3'- -CGGCGG-UGGua-----GGAGuuCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 33781 | 0.67 | 0.713359 |
Target: 5'- gGCgGCCGCCGUguucggUCUCGguAGCcGGCCGg -3' miRNA: 3'- -CGgCGGUGGUA------GGAGU--UCGuCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 49272 | 0.67 | 0.713359 |
Target: 5'- aGCCGCCcgugcGCCGUCgaCGGGaAGGCCc- -3' miRNA: 3'- -CGGCGG-----UGGUAGgaGUUCgUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 109509 | 0.67 | 0.713359 |
Target: 5'- gGCCGCuCACCAgggCCUCcagcGAGCucgGGaGCCGg -3' miRNA: 3'- -CGGCG-GUGGUa--GGAG----UUCG---UC-CGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 148347 | 0.67 | 0.713359 |
Target: 5'- uGCCGCCcCCcgCCUCAccgucgucCAGGUCGUc -3' miRNA: 3'- -CGGCGGuGGuaGGAGUuc------GUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 57876 | 0.67 | 0.722287 |
Target: 5'- uCCGCgCGCCAUCCUCGccccccgAGCGcccccgcuuGGUCGUg -3' miRNA: 3'- cGGCG-GUGGUAGGAGU-------UCGU---------CCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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