Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 56844 | 0.69 | 0.571235 |
Target: 5'- cGCCGCgGCCAgggcggCCgc-GGCGGGCCc- -3' miRNA: 3'- -CGGCGgUGGUa-----GGaguUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 26517 | 0.7 | 0.551151 |
Target: 5'- cGCCGCCGCCccCCgCcGGUGGGCCc- -3' miRNA: 3'- -CGGCGGUGGuaGGaGuUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4630 | 0.7 | 0.548156 |
Target: 5'- gGCCGCCACCGgccgugacgacgucUCCgCGgcGGCuGGGCCGg -3' miRNA: 3'- -CGGCGGUGGU--------------AGGaGU--UCG-UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 51628 | 0.7 | 0.541189 |
Target: 5'- aGCCG-CGCCAUCCUCAcGCAGuaCu- -3' miRNA: 3'- -CGGCgGUGGUAGGAGUuCGUCcgGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 75654 | 0.7 | 0.521453 |
Target: 5'- gGCCGCCACCGccgaCCUCAgagagaagauGGCGGcCCAg -3' miRNA: 3'- -CGGCGGUGGUa---GGAGU----------UCGUCcGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 41700 | 0.7 | 0.51169 |
Target: 5'- uGCCGcCCGCCguGUCCUCcccgggacuGGCGGGCgCAa -3' miRNA: 3'- -CGGC-GGUGG--UAGGAGu--------UCGUCCG-GUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 53772 | 0.7 | 0.51169 |
Target: 5'- cGCCGaCGCCGUCgacgagccgCAGGCAGGCCc- -3' miRNA: 3'- -CGGCgGUGGUAGga-------GUUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 79128 | 0.7 | 0.51169 |
Target: 5'- -gCGCgaGCUAUCCUCGGGC-GGCCGUu -3' miRNA: 3'- cgGCGg-UGGUAGGAGUUCGuCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 20364 | 0.7 | 0.508776 |
Target: 5'- gGCCGcCCGCCGUCCcguuggucccggcgUCcGGCGGGCgGg -3' miRNA: 3'- -CGGC-GGUGGUAGG--------------AGuUCGUCCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 90595 | 0.71 | 0.482878 |
Target: 5'- gGUCGUUACCGagggCUUCAAGgAGGCCGUg -3' miRNA: 3'- -CGGCGGUGGUa---GGAGUUCgUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 83438 | 0.71 | 0.473447 |
Target: 5'- aCCGCCuCUcgCCUCAguGGguGGCCGa -3' miRNA: 3'- cGGCGGuGGuaGGAGU--UCguCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2497 | 0.71 | 0.473447 |
Target: 5'- cGCCGCCGCCGcacgcggCCUgGgcggcgggGGCGGGCCc- -3' miRNA: 3'- -CGGCGGUGGUa------GGAgU--------UCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 84570 | 0.71 | 0.473447 |
Target: 5'- cCCGCCAcCCAUCCcgaCGAGCugcugcuccacaAGGCCAa -3' miRNA: 3'- cGGCGGU-GGUAGGa--GUUCG------------UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 63827 | 0.71 | 0.443916 |
Target: 5'- cGCCGCCACCAgcgagucaaggaCCUUgaGGGCGGGCa-- -3' miRNA: 3'- -CGGCGGUGGUa-----------GGAG--UUCGUCCGgua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 72596 | 0.71 | 0.44301 |
Target: 5'- cGCCGCCACCGaCC-CGGGCccgucgcgacgacaGGGCCu- -3' miRNA: 3'- -CGGCGGUGGUaGGaGUUCG--------------UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 26974 | 0.72 | 0.436696 |
Target: 5'- cGCCGCgGCuCGUgggCCcgCGAGCGGGCCGa -3' miRNA: 3'- -CGGCGgUG-GUA---GGa-GUUCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 89316 | 0.73 | 0.384797 |
Target: 5'- gGCCGCCgACUuUCCUCcgggggacAGCGGGCCGc -3' miRNA: 3'- -CGGCGG-UGGuAGGAGu-------UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2706 | 0.73 | 0.35963 |
Target: 5'- uGCCGCCGCCAgccgCCcagggggUCGgggcccucGGCGGGCCGg -3' miRNA: 3'- -CGGCGGUGGUa---GG-------AGU--------UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 30780 | 0.74 | 0.322249 |
Target: 5'- cGCUuCCGCC-UCCUCGGGCGgGGCCGUc -3' miRNA: 3'- -CGGcGGUGGuAGGAGUUCGU-CCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2929 | 0.74 | 0.322249 |
Target: 5'- gGCCGCCGCC-UCCgggCGGcCGGGCCGg -3' miRNA: 3'- -CGGCGGUGGuAGGa--GUUcGUCCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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