miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 53772 0.7 0.51169
Target:  5'- cGCCGaCGCCGUCgacgagccgCAGGCAGGCCc- -3'
miRNA:   3'- -CGGCgGUGGUAGga-------GUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 54883 0.66 0.762065
Target:  5'- gGCCGCCGCag-CCUCGG--AGGUCAc -3'
miRNA:   3'- -CGGCGGUGguaGGAGUUcgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 56844 0.69 0.571235
Target:  5'- cGCCGCgGCCAgggcggCCgc-GGCGGGCCc- -3'
miRNA:   3'- -CGGCGgUGGUa-----GGaguUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 57876 0.67 0.722287
Target:  5'- uCCGCgCGCCAUCCUCGccccccgAGCGcccccgcuuGGUCGUg -3'
miRNA:   3'- cGGCG-GUGGUAGGAGU-------UCGU---------CCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 57968 0.69 0.571235
Target:  5'- cCCGCCucuCCcgCC-CGGGCAGcGCCAUc -3'
miRNA:   3'- cGGCGGu--GGuaGGaGUUCGUC-CGGUA- -5'
5803 5' -58.7 NC_001806.1 + 60034 0.68 0.622076
Target:  5'- uGCCGuCCGCCGcgcCCUCgAAGCcGGCCc- -3'
miRNA:   3'- -CGGC-GGUGGUa--GGAG-UUCGuCCGGua -5'
5803 5' -58.7 NC_001806.1 + 63114 0.74 0.307847
Target:  5'- uCCaGCC-CCAgCUUCAGGCAGGCCGUg -3'
miRNA:   3'- cGG-CGGuGGUaGGAGUUCGUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 63827 0.71 0.443916
Target:  5'- cGCCGCCACCAgcgagucaaggaCCUUgaGGGCGGGCa-- -3'
miRNA:   3'- -CGGCGGUGGUa-----------GGAG--UUCGUCCGgua -5'
5803 5' -58.7 NC_001806.1 + 70980 0.68 0.632296
Target:  5'- cGCCGCgGCCAUCCgagAGGUAauGGCgCAUg -3'
miRNA:   3'- -CGGCGgUGGUAGGag-UUCGU--CCG-GUA- -5'
5803 5' -58.7 NC_001806.1 + 72596 0.71 0.44301
Target:  5'- cGCCGCCACCGaCC-CGGGCccgucgcgacgacaGGGCCu- -3'
miRNA:   3'- -CGGCGGUGGUaGGaGUUCG--------------UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 73120 0.66 0.780808
Target:  5'- gGCCGCCGgUcgCCg-AGGCGGGCgAg -3'
miRNA:   3'- -CGGCGGUgGuaGGagUUCGUCCGgUa -5'
5803 5' -58.7 NC_001806.1 + 75405 0.67 0.712364
Target:  5'- gGCUGCCGCCGaCCUugucgucCAGGUgcgccGGGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGA-------GUUCG-----UCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 75654 0.7 0.521453
Target:  5'- gGCCGCCACCGccgaCCUCAgagagaagauGGCGGcCCAg -3'
miRNA:   3'- -CGGCGGUGGUa---GGAGU----------UCGUCcGGUa -5'
5803 5' -58.7 NC_001806.1 + 77090 0.67 0.687278
Target:  5'- cCCGCCaaguACCAgggcgUCCUgggcgccaagagcgcCGAGCGGGCCGg -3'
miRNA:   3'- cGGCGG----UGGU-----AGGA---------------GUUCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 78618 0.67 0.723275
Target:  5'- gGCCGCCGCCA-CC-CAccgcacccccgcGGCGcgcguuacGGCCAUg -3'
miRNA:   3'- -CGGCGGUGGUaGGaGU------------UCGU--------CCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 79128 0.7 0.51169
Target:  5'- -gCGCgaGCUAUCCUCGGGC-GGCCGUu -3'
miRNA:   3'- cgGCGg-UGGUAGGAGUUCGuCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 80145 0.66 0.742863
Target:  5'- aGCCGaCC-UCAUCCUCucccGCAGGUCc- -3'
miRNA:   3'- -CGGC-GGuGGUAGGAGuu--CGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 81776 0.68 0.662925
Target:  5'- cCCGCCGCCAaaaCgagcgCGGGgGGGCCAa -3'
miRNA:   3'- cGGCGGUGGUag-Ga----GUUCgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 83438 0.71 0.473447
Target:  5'- aCCGCCuCUcgCCUCAguGGguGGCCGa -3'
miRNA:   3'- cGGCGGuGGuaGGAGU--UCguCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 83508 0.66 0.742863
Target:  5'- cGCCGCUAgCAUCUUCGu---GGCCGc -3'
miRNA:   3'- -CGGCGGUgGUAGGAGUucguCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.