miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 84570 0.71 0.473447
Target:  5'- cCCGCCAcCCAUCCcgaCGAGCugcugcuccacaAGGCCAa -3'
miRNA:   3'- cGGCGGU-GGUAGGa--GUUCG------------UCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 85193 0.67 0.723275
Target:  5'- cGCCGCCACCAgCCgcgAGGCccuaauccuGGCCu- -3'
miRNA:   3'- -CGGCGGUGGUaGGag-UUCGu--------CCGGua -5'
5803 5' -58.7 NC_001806.1 + 86342 0.68 0.661906
Target:  5'- -aCGCCugCAgucCCUCGGGCAGgggucgcGCCAg -3'
miRNA:   3'- cgGCGGugGUa--GGAGUUCGUC-------CGGUa -5'
5803 5' -58.7 NC_001806.1 + 87378 0.68 0.652729
Target:  5'- gGCCGCUcCuCGUCCUCccGGGCugcGGCCGg -3'
miRNA:   3'- -CGGCGGuG-GUAGGAG--UUCGu--CCGGUa -5'
5803 5' -58.7 NC_001806.1 + 89316 0.73 0.384797
Target:  5'- gGCCGCCgACUuUCCUCcgggggacAGCGGGCCGc -3'
miRNA:   3'- -CGGCGG-UGGuAGGAGu-------UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 90595 0.71 0.482878
Target:  5'- gGUCGUUACCGagggCUUCAAGgAGGCCGUg -3'
miRNA:   3'- -CGGCGGUGGUa---GGAGUUCgUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 94472 0.66 0.780808
Target:  5'- aCUGCCACCucaucacccCCUCGcGCGGcGCCAc -3'
miRNA:   3'- cGGCGGUGGua-------GGAGUuCGUC-CGGUa -5'
5803 5' -58.7 NC_001806.1 + 94835 0.67 0.682222
Target:  5'- cCCGUCGCCcgagaacgacucgGUCCgCAAGgAGGCCGa -3'
miRNA:   3'- cGGCGGUGG-------------UAGGaGUUCgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 97312 0.81 0.12332
Target:  5'- cGCCGCCgACCG-CUUCAAGCAGGUCGa -3'
miRNA:   3'- -CGGCGG-UGGUaGGAGUUCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 98552 0.66 0.771498
Target:  5'- -aCGCCGCCAUgUUU--GCGGGCCu- -3'
miRNA:   3'- cgGCGGUGGUAgGAGuuCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 100157 0.69 0.601665
Target:  5'- cGCgGCUAUCugcgCCUCGAGUGGGCUg- -3'
miRNA:   3'- -CGgCGGUGGua--GGAGUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 103029 0.68 0.652729
Target:  5'- gGCCGCCGCCGUCUcCAGcGCcuccaGGGCg-- -3'
miRNA:   3'- -CGGCGGUGGUAGGaGUU-CG-----UCCGgua -5'
5803 5' -58.7 NC_001806.1 + 109509 0.67 0.713359
Target:  5'- gGCCGCuCACCAgggCCUCcagcGAGCucgGGaGCCGg -3'
miRNA:   3'- -CGGCG-GUGGUa--GGAG----UUCG---UC-CGGUa -5'
5803 5' -58.7 NC_001806.1 + 112112 0.66 0.739948
Target:  5'- aGCuCGCUcgcaacguccagGCCGUCCUCGgggcguuugagcgcGGCAcGGCCGa -3'
miRNA:   3'- -CG-GCGG------------UGGUAGGAGU--------------UCGU-CCGGUa -5'
5803 5' -58.7 NC_001806.1 + 119462 0.69 0.601665
Target:  5'- cGCCGCCACCcgGUCCgagcgcggacCGGGCGugcGGCCu- -3'
miRNA:   3'- -CGGCGGUGG--UAGGa---------GUUCGU---CCGGua -5'
5803 5' -58.7 NC_001806.1 + 119889 0.75 0.293943
Target:  5'- uCCGCUGCUGUCCUCGGcGCuGGCCAc -3'
miRNA:   3'- cGGCGGUGGUAGGAGUU-CGuCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 123823 0.67 0.723275
Target:  5'- cCCGCCACCgAUCCggccuccgCGAGC-GGCUu- -3'
miRNA:   3'- cGGCGGUGG-UAGGa-------GUUCGuCCGGua -5'
5803 5' -58.7 NC_001806.1 + 124492 0.68 0.641495
Target:  5'- uGCUGCggucggaCGCCGUCucgCUCcGGCGGGCCGUc -3'
miRNA:   3'- -CGGCG-------GUGGUAG---GAGuUCGUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 134842 0.67 0.713359
Target:  5'- gGUCGCCgACCuggcgcaCCUC--GCAGGCCAg -3'
miRNA:   3'- -CGGCGG-UGGua-----GGAGuuCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 138966 0.67 0.670048
Target:  5'- aCCGCCGCCGUUCacaccCAguuugcgcugcugaAGCGGGCCu- -3'
miRNA:   3'- cGGCGGUGGUAGGa----GU--------------UCGUCCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.