Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 86342 | 0.68 | 0.661906 |
Target: 5'- -aCGCCugCAgucCCUCGGGCAGgggucgcGCCAg -3' miRNA: 3'- cgGCGGugGUa--GGAGUUCGUC-------CGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 85193 | 0.67 | 0.723275 |
Target: 5'- cGCCGCCACCAgCCgcgAGGCccuaauccuGGCCu- -3' miRNA: 3'- -CGGCGGUGGUaGGag-UUCGu--------CCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 84570 | 0.71 | 0.473447 |
Target: 5'- cCCGCCAcCCAUCCcgaCGAGCugcugcuccacaAGGCCAa -3' miRNA: 3'- cGGCGGU-GGUAGGa--GUUCG------------UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 83508 | 0.66 | 0.742863 |
Target: 5'- cGCCGCUAgCAUCUUCGu---GGCCGc -3' miRNA: 3'- -CGGCGGUgGUAGGAGUucguCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 83438 | 0.71 | 0.473447 |
Target: 5'- aCCGCCuCUcgCCUCAguGGguGGCCGa -3' miRNA: 3'- cGGCGGuGGuaGGAGU--UCguCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 81776 | 0.68 | 0.662925 |
Target: 5'- cCCGCCGCCAaaaCgagcgCGGGgGGGCCAa -3' miRNA: 3'- cGGCGGUGGUag-Ga----GUUCgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 80145 | 0.66 | 0.742863 |
Target: 5'- aGCCGaCC-UCAUCCUCucccGCAGGUCc- -3' miRNA: 3'- -CGGC-GGuGGUAGGAGuu--CGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 79128 | 0.7 | 0.51169 |
Target: 5'- -gCGCgaGCUAUCCUCGGGC-GGCCGUu -3' miRNA: 3'- cgGCGg-UGGUAGGAGUUCGuCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 78618 | 0.67 | 0.723275 |
Target: 5'- gGCCGCCGCCA-CC-CAccgcacccccgcGGCGcgcguuacGGCCAUg -3' miRNA: 3'- -CGGCGGUGGUaGGaGU------------UCGU--------CCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 77090 | 0.67 | 0.687278 |
Target: 5'- cCCGCCaaguACCAgggcgUCCUgggcgccaagagcgcCGAGCGGGCCGg -3' miRNA: 3'- cGGCGG----UGGU-----AGGA---------------GUUCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 75654 | 0.7 | 0.521453 |
Target: 5'- gGCCGCCACCGccgaCCUCAgagagaagauGGCGGcCCAg -3' miRNA: 3'- -CGGCGGUGGUa---GGAGU----------UCGUCcGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 75405 | 0.67 | 0.712364 |
Target: 5'- gGCUGCCGCCGaCCUugucgucCAGGUgcgccGGGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGA-------GUUCG-----UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 73120 | 0.66 | 0.780808 |
Target: 5'- gGCCGCCGgUcgCCg-AGGCGGGCgAg -3' miRNA: 3'- -CGGCGGUgGuaGGagUUCGUCCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 72596 | 0.71 | 0.44301 |
Target: 5'- cGCCGCCACCGaCC-CGGGCccgucgcgacgacaGGGCCu- -3' miRNA: 3'- -CGGCGGUGGUaGGaGUUCG--------------UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 70980 | 0.68 | 0.632296 |
Target: 5'- cGCCGCgGCCAUCCgagAGGUAauGGCgCAUg -3' miRNA: 3'- -CGGCGgUGGUAGGag-UUCGU--CCG-GUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 63827 | 0.71 | 0.443916 |
Target: 5'- cGCCGCCACCAgcgagucaaggaCCUUgaGGGCGGGCa-- -3' miRNA: 3'- -CGGCGGUGGUa-----------GGAG--UUCGUCCGgua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 63114 | 0.74 | 0.307847 |
Target: 5'- uCCaGCC-CCAgCUUCAGGCAGGCCGUg -3' miRNA: 3'- cGG-CGGuGGUaGGAGUUCGUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 60034 | 0.68 | 0.622076 |
Target: 5'- uGCCGuCCGCCGcgcCCUCgAAGCcGGCCc- -3' miRNA: 3'- -CGGC-GGUGGUa--GGAG-UUCGuCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 57968 | 0.69 | 0.571235 |
Target: 5'- cCCGCCucuCCcgCC-CGGGCAGcGCCAUc -3' miRNA: 3'- cGGCGGu--GGuaGGaGUUCGUC-CGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 57876 | 0.67 | 0.722287 |
Target: 5'- uCCGCgCGCCAUCCUCGccccccgAGCGcccccgcuuGGUCGUg -3' miRNA: 3'- cGGCG-GUGGUAGGAGU-------UCGU---------CCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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