miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 56844 0.69 0.571235
Target:  5'- cGCCGCgGCCAgggcggCCgc-GGCGGGCCc- -3'
miRNA:   3'- -CGGCGgUGGUa-----GGaguUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 54883 0.66 0.762065
Target:  5'- gGCCGCCGCag-CCUCGG--AGGUCAc -3'
miRNA:   3'- -CGGCGGUGguaGGAGUUcgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 53772 0.7 0.51169
Target:  5'- cGCCGaCGCCGUCgacgagccgCAGGCAGGCCc- -3'
miRNA:   3'- -CGGCgGUGGUAGga-------GUUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 51628 0.7 0.541189
Target:  5'- aGCCG-CGCCAUCCUCAcGCAGuaCu- -3'
miRNA:   3'- -CGGCgGUGGUAGGAGUuCGUCcgGua -5'
5803 5' -58.7 NC_001806.1 + 50928 0.67 0.703375
Target:  5'- cGCC-CCGCC-UCCUCAGcGCcccGGGCCc- -3'
miRNA:   3'- -CGGcGGUGGuAGGAGUU-CG---UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 49432 0.66 0.733113
Target:  5'- uCC-CCGCgGUCCUCc-GCAGGCCc- -3'
miRNA:   3'- cGGcGGUGgUAGGAGuuCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 49272 0.67 0.713359
Target:  5'- aGCCGCCcgugcGCCGUCgaCGGGaAGGCCc- -3'
miRNA:   3'- -CGGCGG-----UGGUAGgaGUUCgUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 43462 0.67 0.703375
Target:  5'- gGCgCGCCACCAcCC-CGGGUucgAGGCCc- -3'
miRNA:   3'- -CG-GCGGUGGUaGGaGUUCG---UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 41700 0.7 0.51169
Target:  5'- uGCCGcCCGCCguGUCCUCcccgggacuGGCGGGCgCAa -3'
miRNA:   3'- -CGGC-GGUGG--UAGGAGu--------UCGUCCG-GUa -5'
5803 5' -58.7 NC_001806.1 + 33781 0.67 0.713359
Target:  5'- gGCgGCCGCCGUguucggUCUCGguAGCcGGCCGg -3'
miRNA:   3'- -CGgCGGUGGUA------GGAGU--UCGuCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 33349 0.66 0.771498
Target:  5'- gGCCGCC-CCggCUgCAGGgGGGCCc- -3'
miRNA:   3'- -CGGCGGuGGuaGGaGUUCgUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 33133 0.66 0.762065
Target:  5'- aCCGCCGCgGUcgggggccCCUCGuccCGGGCCGUa -3'
miRNA:   3'- cGGCGGUGgUA--------GGAGUuc-GUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 30780 0.74 0.322249
Target:  5'- cGCUuCCGCC-UCCUCGGGCGgGGCCGUc -3'
miRNA:   3'- -CGGcGGUGGuAGGAGUUCGU-CCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 30490 0.66 0.752517
Target:  5'- uCCGCCGCC-UCUgUCGAGCAGGaggCGg -3'
miRNA:   3'- cGGCGGUGGuAGG-AGUUCGUCCg--GUa -5'
5803 5' -58.7 NC_001806.1 + 27222 0.67 0.69333
Target:  5'- cGCUuggaGCCAgcCCGcCCUCAcagGGCGGGCCGc -3'
miRNA:   3'- -CGG----CGGU--GGUaGGAGU---UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 26974 0.72 0.436696
Target:  5'- cGCCGCgGCuCGUgggCCcgCGAGCGGGCCGa -3'
miRNA:   3'- -CGGCGgUG-GUA---GGa-GUUCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 26517 0.7 0.551151
Target:  5'- cGCCGCCGCCccCCgCcGGUGGGCCc- -3'
miRNA:   3'- -CGGCGGUGGuaGGaGuUCGUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 23255 0.68 0.662925
Target:  5'- gGCCGCCGCCG-CCUCc-GCcGcGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGAGuuCGuC-CGGUa -5'
5803 5' -58.7 NC_001806.1 + 22818 0.66 0.742863
Target:  5'- gGCCGCCugCcgcgggAUCCUgGAggcGCuGGCCGa -3'
miRNA:   3'- -CGGCGGugG------UAGGAgUU---CGuCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 22623 0.67 0.673096
Target:  5'- cGCCGCCGCCGcaCCgggCGAGCGcGCgGUg -3'
miRNA:   3'- -CGGCGGUGGUa-GGa--GUUCGUcCGgUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.