Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 21816 | 0.67 | 0.707376 |
Target: 5'- cGCCGCC-CCcgCC-CGGGCcacccccccucuccgAGGCCGc -3' miRNA: 3'- -CGGCGGuGGuaGGaGUUCG---------------UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 21600 | 0.66 | 0.733113 |
Target: 5'- aGCCGCCGCggagaCGUCgUCAcggccgguGGC-GGCCAUc -3' miRNA: 3'- -CGGCGGUG-----GUAGgAGU--------UCGuCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 20364 | 0.7 | 0.508776 |
Target: 5'- gGCCGcCCGCCGUCCcguuggucccggcgUCcGGCGGGCgGg -3' miRNA: 3'- -CGGC-GGUGGUAGG--------------AGuUCGUCCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 20102 | 0.67 | 0.683234 |
Target: 5'- gGCCGgCGCCGUCUgCGGGCgucggucgcgccGGGCCu- -3' miRNA: 3'- -CGGCgGUGGUAGGaGUUCG------------UCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 12893 | 0.68 | 0.652729 |
Target: 5'- cGgCGCCACCguccccacgggGUCCUcCAAGaGGGCCGa -3' miRNA: 3'- -CgGCGGUGG-----------UAGGA-GUUCgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 12784 | 0.66 | 0.752517 |
Target: 5'- uGCCGcCCACCGcgCCggCGAuCAGGCCc- -3' miRNA: 3'- -CGGC-GGUGGUa-GGa-GUUcGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 8819 | 0.66 | 0.742863 |
Target: 5'- gGCCGCC-UCGUCUUCGcuuuccgaguAGUAGGCUu- -3' miRNA: 3'- -CGGCGGuGGUAGGAGU----------UCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 5919 | 0.66 | 0.762065 |
Target: 5'- uGCCGCCcccCCAUuggCCggCGGGCGGGaCCGc -3' miRNA: 3'- -CGGCGGu--GGUA---GGa-GUUCGUCC-GGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4630 | 0.7 | 0.548156 |
Target: 5'- gGCCGCCACCGgccgugacgacgucUCCgCGgcGGCuGGGCCGg -3' miRNA: 3'- -CGGCGGUGGU--------------AGGaGU--UCG-UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4389 | 0.69 | 0.59149 |
Target: 5'- cGCCGCCGCCcggggCUUggGCGcGGCCu- -3' miRNA: 3'- -CGGCGGUGGuag--GAGuuCGU-CCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4325 | 0.66 | 0.742863 |
Target: 5'- gGCCgGCCACCG-CCgc--GCGGGCCc- -3' miRNA: 3'- -CGG-CGGUGGUaGGaguuCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3911 | 0.66 | 0.762065 |
Target: 5'- cGCgCGgCGCCcgagAUCCggAAGCAGGCCu- -3' miRNA: 3'- -CG-GCgGUGG----UAGGagUUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3198 | 0.69 | 0.59149 |
Target: 5'- cGCUGCCGCCggccacgcgcagGUCCcCGcGCAGGCgCAUg -3' miRNA: 3'- -CGGCGGUGG------------UAGGaGUuCGUCCG-GUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3040 | 0.69 | 0.581344 |
Target: 5'- gGCCGCCGCCG-CCagCAGggggcGCAGGCUc- -3' miRNA: 3'- -CGGCGGUGGUaGGa-GUU-----CGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2929 | 0.74 | 0.322249 |
Target: 5'- gGCCGCCGCC-UCCgggCGGcCGGGCCGg -3' miRNA: 3'- -CGGCGGUGGuAGGa--GUUcGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2706 | 0.73 | 0.35963 |
Target: 5'- uGCCGCCGCCAgccgCCcagggggUCGgggcccucGGCGGGCCGg -3' miRNA: 3'- -CGGCGGUGGUa---GG-------AGU--------UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2497 | 0.71 | 0.473447 |
Target: 5'- cGCCGCCGCCGcacgcggCCUgGgcggcgggGGCGGGCCc- -3' miRNA: 3'- -CGGCGGUGGUa------GGAgU--------UCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2320 | 0.69 | 0.581344 |
Target: 5'- cGCCGCCgGCCAggUCCUCGcccGGCAgcGGCgAg -3' miRNA: 3'- -CGGCGG-UGGU--AGGAGU---UCGU--CCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2016 | 0.68 | 0.662925 |
Target: 5'- uGCCGCgaCACCGcgggCC-CGucGGCGGGCCAg -3' miRNA: 3'- -CGGCG--GUGGUa---GGaGU--UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 1719 | 0.69 | 0.59149 |
Target: 5'- cGCCGCCcgGCCGUCCagCGccggcAGCAcGGCCc- -3' miRNA: 3'- -CGGCGG--UGGUAGGa-GU-----UCGU-CCGGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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