Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 51628 | 0.7 | 0.541189 |
Target: 5'- aGCCG-CGCCAUCCUCAcGCAGuaCu- -3' miRNA: 3'- -CGGCgGUGGUAGGAGUuCGUCcgGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4630 | 0.7 | 0.548156 |
Target: 5'- gGCCGCCACCGgccgugacgacgucUCCgCGgcGGCuGGGCCGg -3' miRNA: 3'- -CGGCGGUGGU--------------AGGaGU--UCG-UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 100157 | 0.69 | 0.601665 |
Target: 5'- cGCgGCUAUCugcgCCUCGAGUGGGCUg- -3' miRNA: 3'- -CGgCGGUGGua--GGAGUUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 119462 | 0.69 | 0.601665 |
Target: 5'- cGCCGCCACCcgGUCCgagcgcggacCGGGCGugcGGCCu- -3' miRNA: 3'- -CGGCGGUGG--UAGGa---------GUUCGU---CCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 60034 | 0.68 | 0.622076 |
Target: 5'- uGCCGuCCGCCGcgcCCUCgAAGCcGGCCc- -3' miRNA: 3'- -CGGC-GGUGGUa--GGAG-UUCGuCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 70980 | 0.68 | 0.632296 |
Target: 5'- cGCCGCgGCCAUCCgagAGGUAauGGCgCAUg -3' miRNA: 3'- -CGGCGgUGGUAGGag-UUCGU--CCG-GUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 124492 | 0.68 | 0.641495 |
Target: 5'- uGCUGCggucggaCGCCGUCucgCUCcGGCGGGCCGUc -3' miRNA: 3'- -CGGCG-------GUGGUAG---GAGuUCGUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 12893 | 0.68 | 0.652729 |
Target: 5'- cGgCGCCACCguccccacgggGUCCUcCAAGaGGGCCGa -3' miRNA: 3'- -CgGCGGUGG-----------UAGGA-GUUCgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 87378 | 0.68 | 0.652729 |
Target: 5'- gGCCGCUcCuCGUCCUCccGGGCugcGGCCGg -3' miRNA: 3'- -CGGCGGuG-GUAGGAG--UUCGu--CCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 103029 | 0.68 | 0.652729 |
Target: 5'- gGCCGCCGCCGUCUcCAGcGCcuccaGGGCg-- -3' miRNA: 3'- -CGGCGGUGGUAGGaGUU-CG-----UCCGgua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3198 | 0.69 | 0.59149 |
Target: 5'- cGCUGCCGCCggccacgcgcagGUCCcCGcGCAGGCgCAUg -3' miRNA: 3'- -CGGCGGUGG------------UAGGaGUuCGUCCG-GUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 1719 | 0.69 | 0.59149 |
Target: 5'- cGCCGCCcgGCCGUCCagCGccggcAGCAcGGCCc- -3' miRNA: 3'- -CGGCGG--UGGUAGGa-GU-----UCGU-CCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 26517 | 0.7 | 0.551151 |
Target: 5'- cGCCGCCGCCccCCgCcGGUGGGCCc- -3' miRNA: 3'- -CGGCGGUGGuaGGaGuUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 56844 | 0.69 | 0.571235 |
Target: 5'- cGCCGCgGCCAgggcggCCgc-GGCGGGCCc- -3' miRNA: 3'- -CGGCGgUGGUa-----GGaguUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4 | 0.69 | 0.571235 |
Target: 5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 57968 | 0.69 | 0.571235 |
Target: 5'- cCCGCCucuCCcgCC-CGGGCAGcGCCAUc -3' miRNA: 3'- cGGCGGu--GGuaGGaGUUCGUC-CGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 151714 | 0.69 | 0.571235 |
Target: 5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2320 | 0.69 | 0.581344 |
Target: 5'- cGCCGCCgGCCAggUCCUCGcccGGCAgcGGCgAg -3' miRNA: 3'- -CGGCGG-UGGU--AGGAGU---UCGU--CCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3040 | 0.69 | 0.581344 |
Target: 5'- gGCCGCCGCCG-CCagCAGggggcGCAGGCUc- -3' miRNA: 3'- -CGGCGGUGGUaGGa-GUU-----CGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4389 | 0.69 | 0.59149 |
Target: 5'- cGCCGCCGCCcggggCUUggGCGcGGCCu- -3' miRNA: 3'- -CGGCGGUGGuag--GAGuuCGU-CCGGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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