Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5803 | 5' | -58.7 | NC_001806.1 | + | 2706 | 0.73 | 0.35963 |
Target: 5'- uGCCGCCGCCAgccgCCcagggggUCGgggcccucGGCGGGCCGg -3' miRNA: 3'- -CGGCGGUGGUa---GG-------AGU--------UCGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 30780 | 0.74 | 0.322249 |
Target: 5'- cGCUuCCGCC-UCCUCGGGCGgGGCCGUc -3' miRNA: 3'- -CGGcGGUGGuAGGAGUUCGU-CCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2929 | 0.74 | 0.322249 |
Target: 5'- gGCCGCCGCC-UCCgggCGGcCGGGCCGg -3' miRNA: 3'- -CGGCGGUGGuAGGa--GUUcGUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 63114 | 0.74 | 0.307847 |
Target: 5'- uCCaGCC-CCAgCUUCAGGCAGGCCGUg -3' miRNA: 3'- cGG-CGGuGGUaGGAGUUCGUCCGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 119889 | 0.75 | 0.293943 |
Target: 5'- uCCGCUGCUGUCCUCGGcGCuGGCCAc -3' miRNA: 3'- cGGCGGUGGUAGGAGUU-CGuCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 20364 | 0.7 | 0.508776 |
Target: 5'- gGCCGcCCGCCGUCCcguuggucccggcgUCcGGCGGGCgGg -3' miRNA: 3'- -CGGC-GGUGGUAGG--------------AGuUCGUCCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 41700 | 0.7 | 0.51169 |
Target: 5'- uGCCGcCCGCCguGUCCUCcccgggacuGGCGGGCgCAa -3' miRNA: 3'- -CGGC-GGUGG--UAGGAGu--------UCGUCCG-GUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4389 | 0.69 | 0.59149 |
Target: 5'- cGCCGCCGCCcggggCUUggGCGcGGCCu- -3' miRNA: 3'- -CGGCGGUGGuag--GAGuuCGU-CCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 3040 | 0.69 | 0.581344 |
Target: 5'- gGCCGCCGCCG-CCagCAGggggcGCAGGCUc- -3' miRNA: 3'- -CGGCGGUGGUaGGa-GUU-----CGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 2320 | 0.69 | 0.581344 |
Target: 5'- cGCCGCCgGCCAggUCCUCGcccGGCAgcGGCgAg -3' miRNA: 3'- -CGGCGG-UGGU--AGGAGU---UCGU--CCGgUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 151714 | 0.69 | 0.571235 |
Target: 5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 57968 | 0.69 | 0.571235 |
Target: 5'- cCCGCCucuCCcgCC-CGGGCAGcGCCAUc -3' miRNA: 3'- cGGCGGu--GGuaGGaGUUCGUC-CGGUA- -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4 | 0.69 | 0.571235 |
Target: 5'- cGCCGCCACCG-CUUUAAa-GGGCCGc -3' miRNA: 3'- -CGGCGGUGGUaGGAGUUcgUCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 56844 | 0.69 | 0.571235 |
Target: 5'- cGCCGCgGCCAgggcggCCgc-GGCGGGCCc- -3' miRNA: 3'- -CGGCGgUGGUa-----GGaguUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 26517 | 0.7 | 0.551151 |
Target: 5'- cGCCGCCGCCccCCgCcGGUGGGCCc- -3' miRNA: 3'- -CGGCGGUGGuaGGaGuUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 4630 | 0.7 | 0.548156 |
Target: 5'- gGCCGCCACCGgccgugacgacgucUCCgCGgcGGCuGGGCCGg -3' miRNA: 3'- -CGGCGGUGGU--------------AGGaGU--UCG-UCCGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 51628 | 0.7 | 0.541189 |
Target: 5'- aGCCG-CGCCAUCCUCAcGCAGuaCu- -3' miRNA: 3'- -CGGCgGUGGUAGGAGUuCGUCcgGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 75654 | 0.7 | 0.521453 |
Target: 5'- gGCCGCCACCGccgaCCUCAgagagaagauGGCGGcCCAg -3' miRNA: 3'- -CGGCGGUGGUa---GGAGU----------UCGUCcGGUa -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 53772 | 0.7 | 0.51169 |
Target: 5'- cGCCGaCGCCGUCgacgagccgCAGGCAGGCCc- -3' miRNA: 3'- -CGGCgGUGGUAGga-------GUUCGUCCGGua -5' |
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5803 | 5' | -58.7 | NC_001806.1 | + | 79128 | 0.7 | 0.51169 |
Target: 5'- -gCGCgaGCUAUCCUCGGGC-GGCCGUu -3' miRNA: 3'- cgGCGg-UGGUAGGAGUUCGuCCGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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