miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 5' -58.7 NC_001806.1 + 85193 0.67 0.723275
Target:  5'- cGCCGCCACCAgCCgcgAGGCccuaauccuGGCCu- -3'
miRNA:   3'- -CGGCGGUGGUaGGag-UUCGu--------CCGGua -5'
5803 5' -58.7 NC_001806.1 + 123823 0.67 0.723275
Target:  5'- cCCGCCACCgAUCCggccuccgCGAGC-GGCUu- -3'
miRNA:   3'- cGGCGGUGG-UAGGa-------GUUCGuCCGGua -5'
5803 5' -58.7 NC_001806.1 + 78618 0.67 0.723275
Target:  5'- gGCCGCCGCCA-CC-CAccgcacccccgcGGCGcgcguuacGGCCAUg -3'
miRNA:   3'- -CGGCGGUGGUaGGaGU------------UCGU--------CCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 57876 0.67 0.722287
Target:  5'- uCCGCgCGCCAUCCUCGccccccgAGCGcccccgcuuGGUCGUg -3'
miRNA:   3'- cGGCG-GUGGUAGGAGU-------UCGU---------CCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 134842 0.67 0.713359
Target:  5'- gGUCGCCgACCuggcgcaCCUC--GCAGGCCAg -3'
miRNA:   3'- -CGGCGG-UGGua-----GGAGuuCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 33781 0.67 0.713359
Target:  5'- gGCgGCCGCCGUguucggUCUCGguAGCcGGCCGg -3'
miRNA:   3'- -CGgCGGUGGUA------GGAGU--UCGuCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 109509 0.67 0.713359
Target:  5'- gGCCGCuCACCAgggCCUCcagcGAGCucgGGaGCCGg -3'
miRNA:   3'- -CGGCG-GUGGUa--GGAG----UUCG---UC-CGGUa -5'
5803 5' -58.7 NC_001806.1 + 49272 0.67 0.713359
Target:  5'- aGCCGCCcgugcGCCGUCgaCGGGaAGGCCc- -3'
miRNA:   3'- -CGGCGG-----UGGUAGgaGUUCgUCCGGua -5'
5803 5' -58.7 NC_001806.1 + 148347 0.67 0.713359
Target:  5'- uGCCGCCcCCcgCCUCAccgucgucCAGGUCGUc -3'
miRNA:   3'- -CGGCGGuGGuaGGAGUuc------GUCCGGUA- -5'
5803 5' -58.7 NC_001806.1 + 75405 0.67 0.712364
Target:  5'- gGCUGCCGCCGaCCUugucgucCAGGUgcgccGGGCCGc -3'
miRNA:   3'- -CGGCGGUGGUaGGA-------GUUCG-----UCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 21816 0.67 0.707376
Target:  5'- cGCCGCC-CCcgCC-CGGGCcacccccccucuccgAGGCCGc -3'
miRNA:   3'- -CGGCGGuGGuaGGaGUUCG---------------UCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 43462 0.67 0.703375
Target:  5'- gGCgCGCCACCAcCC-CGGGUucgAGGCCc- -3'
miRNA:   3'- -CG-GCGGUGGUaGGaGUUCG---UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 50928 0.67 0.703375
Target:  5'- cGCC-CCGCC-UCCUCAGcGCcccGGGCCc- -3'
miRNA:   3'- -CGGcGGUGGuAGGAGUU-CG---UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 27222 0.67 0.69333
Target:  5'- cGCUuggaGCCAgcCCGcCCUCAcagGGCGGGCCGc -3'
miRNA:   3'- -CGG----CGGU--GGUaGGAGU---UCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 77090 0.67 0.687278
Target:  5'- cCCGCCaaguACCAgggcgUCCUgggcgccaagagcgcCGAGCGGGCCGg -3'
miRNA:   3'- cGGCGG----UGGU-----AGGA---------------GUUCGUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 20102 0.67 0.683234
Target:  5'- gGCCGgCGCCGUCUgCGGGCgucggucgcgccGGGCCu- -3'
miRNA:   3'- -CGGCgGUGGUAGGaGUUCG------------UCCGGua -5'
5803 5' -58.7 NC_001806.1 + 94835 0.67 0.682222
Target:  5'- cCCGUCGCCcgagaacgacucgGUCCgCAAGgAGGCCGa -3'
miRNA:   3'- cGGCGGUGG-------------UAGGaGUUCgUCCGGUa -5'
5803 5' -58.7 NC_001806.1 + 1286 0.67 0.673096
Target:  5'- cGCCGCCGUCGUCUUCGuccCAGGCg-- -3'
miRNA:   3'- -CGGCGGUGGUAGGAGUuc-GUCCGgua -5'
5803 5' -58.7 NC_001806.1 + 22623 0.67 0.673096
Target:  5'- cGCCGCCGCCGcaCCgggCGAGCGcGCgGUg -3'
miRNA:   3'- -CGGCGGUGGUa-GGa--GUUCGUcCGgUA- -5'
5803 5' -58.7 NC_001806.1 + 138966 0.67 0.670048
Target:  5'- aCCGCCGCCGUUCacaccCAguuugcgcugcugaAGCGGGCCu- -3'
miRNA:   3'- cGGCGGUGGUAGGa----GU--------------UCGUCCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.