miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5804 5' -56.9 NC_001806.1 + 125726 0.66 0.892442
Target:  5'- ---cCCU-CUGGCCAuCGguccccucugGCCCGCCUg -3'
miRNA:   3'- ccauGGAcGACCGGUuGU----------UGGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 88981 0.66 0.892442
Target:  5'- aGGcGCgaGCgccgcGGCCAgaaGCcGCCCGaCCCg -3'
miRNA:   3'- -CCaUGgaCGa----CCGGU---UGuUGGGC-GGG- -5'
5804 5' -56.9 NC_001806.1 + 88068 0.66 0.892442
Target:  5'- uGGgcagGCCc-CUGGCCGcCAGCUCGUUCa -3'
miRNA:   3'- -CCa---UGGacGACCGGUuGUUGGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 137484 0.66 0.892442
Target:  5'- cGUACaccCUGaCCAGCAAcCCCGCCUc -3'
miRNA:   3'- cCAUGgacGACcGGUUGUU-GGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 70240 0.66 0.888435
Target:  5'- gGGUGCCgucgagcagcugcgGCcccUGGuCCAGCugcagcccccCCCGCCCc -3'
miRNA:   3'- -CCAUGGa-------------CG---ACC-GGUUGuu--------GGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 81977 0.66 0.885719
Target:  5'- gGGUaauaGCCUGCUcggcGGCgCGGCAcaggAUCCGUCUc -3'
miRNA:   3'- -CCA----UGGACGA----CCG-GUUGU----UGGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 122100 0.66 0.885719
Target:  5'- uGUGgCUGgaGGCaaaCAcgaugguacugcGCGACCCGUCCg -3'
miRNA:   3'- cCAUgGACgaCCG---GU------------UGUUGGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 18951 0.66 0.885719
Target:  5'- cGGUugGCaCUGCgugggGGUCccgGGCGACCCGCa- -3'
miRNA:   3'- -CCA--UG-GACGa----CCGG---UUGUUGGGCGgg -5'
5804 5' -56.9 NC_001806.1 + 79198 0.66 0.885719
Target:  5'- uGUACCaGCgcgcccCCGACGACCagaGCCCc -3'
miRNA:   3'- cCAUGGaCGacc---GGUUGUUGGg--CGGG- -5'
5804 5' -56.9 NC_001806.1 + 141421 0.66 0.885719
Target:  5'- --gGCCggggcgGCgcgcGGCCAACcggcggauAACuCCGCCCa -3'
miRNA:   3'- ccaUGGa-----CGa---CCGGUUG--------UUG-GGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 91397 0.66 0.885719
Target:  5'- uGGUGCCcggGUucgagGGUCGGCccACCgCGCCCc -3'
miRNA:   3'- -CCAUGGa--CGa----CCGGUUGu-UGG-GCGGG- -5'
5804 5' -56.9 NC_001806.1 + 58243 0.66 0.885719
Target:  5'- --gACCUGCagucGCCGG-AGCaCCGCCCg -3'
miRNA:   3'- ccaUGGACGac--CGGUUgUUG-GGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 60128 0.66 0.878775
Target:  5'- gGGUcAgCUGgaGGCgGACGauGCCUGCgCCa -3'
miRNA:   3'- -CCA-UgGACgaCCGgUUGU--UGGGCG-GG- -5'
5804 5' -56.9 NC_001806.1 + 56505 0.66 0.878775
Target:  5'- --cACCUGg-GGCCAcaGCGGCagGCCCg -3'
miRNA:   3'- ccaUGGACgaCCGGU--UGUUGggCGGG- -5'
5804 5' -56.9 NC_001806.1 + 143135 0.66 0.878775
Target:  5'- aGGgGCCgcggauggGCgGGCCuACuugguuuCCCGCCCc -3'
miRNA:   3'- -CCaUGGa-------CGaCCGGuUGuu-----GGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 140679 0.66 0.878775
Target:  5'- uGUugCUGCgcgGcGCCcGCGugCCGCgCu -3'
miRNA:   3'- cCAugGACGa--C-CGGuUGUugGGCGgG- -5'
5804 5' -56.9 NC_001806.1 + 94876 0.66 0.878775
Target:  5'- ---cCCUGCUGGaggcgcaCGACGuguuucaggccACCaCGCCCg -3'
miRNA:   3'- ccauGGACGACCg------GUUGU-----------UGG-GCGGG- -5'
5804 5' -56.9 NC_001806.1 + 115300 0.66 0.878775
Target:  5'- --gACCac--GGCCAgaGCGACCCGUCCc -3'
miRNA:   3'- ccaUGGacgaCCGGU--UGUUGGGCGGG- -5'
5804 5' -56.9 NC_001806.1 + 70691 0.66 0.878775
Target:  5'- --aACgUGCUGGCCGugGuCCgGCgCg -3'
miRNA:   3'- ccaUGgACGACCGGUugUuGGgCGgG- -5'
5804 5' -56.9 NC_001806.1 + 21792 0.66 0.878775
Target:  5'- cGGcGCCgGCagcccccgGGCgGACGccgccCCCGCCCg -3'
miRNA:   3'- -CCaUGGaCGa-------CCGgUUGUu----GGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.