miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5805 3' -59.6 NC_001806.1 + 23926 0.66 0.795193
Target:  5'- gCGAGgaCCUgg--CCGGCggcgggGCCuGGGGg -3'
miRNA:   3'- -GCUCgaGGAguaaGGCCGa-----CGG-CCCC- -5'
5805 3' -59.6 NC_001806.1 + 87381 0.66 0.786368
Target:  5'- --cGCUCCUCGUccUCCcgGGCUgcgGCCGGa- -3'
miRNA:   3'- gcuCGAGGAGUA--AGG--CCGA---CGGCCcc -5'
5805 3' -59.6 NC_001806.1 + 73965 0.66 0.768336
Target:  5'- cCGGGCcCCUCGgcguaaugCCcGCcccgGCCGGGGc -3'
miRNA:   3'- -GCUCGaGGAGUaa------GGcCGa---CGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 12936 0.66 0.767421
Target:  5'- uCGGGgUCUUCcggggcgaGUUCUGGCUGCguggcguUGGGGu -3'
miRNA:   3'- -GCUCgAGGAG--------UAAGGCCGACG-------GCCCC- -5'
5805 3' -59.6 NC_001806.1 + 83778 0.66 0.758219
Target:  5'- cCGGGC-CCUCAUcggaaccuuggccUCCGGggGCgaggaGGGGg -3'
miRNA:   3'- -GCUCGaGGAGUA-------------AGGCCgaCGg----CCCC- -5'
5805 3' -59.6 NC_001806.1 + 66433 0.66 0.749848
Target:  5'- gGGGCgccCCcgCAggUCCGGCUGCCaGcGGu -3'
miRNA:   3'- gCUCGa--GGa-GUa-AGGCCGACGGcC-CC- -5'
5805 3' -59.6 NC_001806.1 + 100375 0.67 0.740454
Target:  5'- gGuAGCUCC-CGUcgCCgGGCggcgcggggGCCGGGGu -3'
miRNA:   3'- gC-UCGAGGaGUAa-GG-CCGa--------CGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 38635 0.67 0.730971
Target:  5'- cCGGGUgguggaugUCCUUAUacCCGuGgUGCCGGGGc -3'
miRNA:   3'- -GCUCG--------AGGAGUAa-GGC-CgACGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 11367 0.67 0.730971
Target:  5'- gCGGGCUCCgacucUUCGGCgaugGCCGucaGGGa -3'
miRNA:   3'- -GCUCGAGGagua-AGGCCGa---CGGC---CCC- -5'
5805 3' -59.6 NC_001806.1 + 2732 0.67 0.730971
Target:  5'- gGGGC-CCUCGgcgggCCGGCgcgacacgGCCacGGGGc -3'
miRNA:   3'- gCUCGaGGAGUaa---GGCCGa-------CGG--CCCC- -5'
5805 3' -59.6 NC_001806.1 + 38113 0.67 0.711773
Target:  5'- gCGGGCcaCCUUGcccCCGuGCUGCuCGGGGg -3'
miRNA:   3'- -GCUCGa-GGAGUaa-GGC-CGACG-GCCCC- -5'
5805 3' -59.6 NC_001806.1 + 105349 0.67 0.702074
Target:  5'- --cGC-CCg----CCGGCUGCCGGGa -3'
miRNA:   3'- gcuCGaGGaguaaGGCCGACGGCCCc -5'
5805 3' -59.6 NC_001806.1 + 130823 0.67 0.702074
Target:  5'- cCGcGCgCCUgCAUUgggacUCGGCgGCCGGGGg -3'
miRNA:   3'- -GCuCGaGGA-GUAA-----GGCCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 109520 0.67 0.702074
Target:  5'- aGGGcCUCCagCGagCuCGGgaGCCGGGGg -3'
miRNA:   3'- gCUC-GAGGa-GUaaG-GCCgaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 102079 0.67 0.702074
Target:  5'- aCGGGCgauggCCUCcgaagggaCGGCU-CCGGGGa -3'
miRNA:   3'- -GCUCGa----GGAGuaag----GCCGAcGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 84043 0.67 0.693297
Target:  5'- --uGCUCCUCGccggcacccccgccgUCUGGgaGUCGGGGc -3'
miRNA:   3'- gcuCGAGGAGUa--------------AGGCCgaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 33337 0.67 0.69232
Target:  5'- cCGAcGCcCCUUGgccgccCCGGCUGCaGGGGg -3'
miRNA:   3'- -GCU-CGaGGAGUaa----GGCCGACGgCCCC- -5'
5805 3' -59.6 NC_001806.1 + 4060 0.67 0.69232
Target:  5'- uCGGGCgCC-CAca-CGGCcGCCGGGGc -3'
miRNA:   3'- -GCUCGaGGaGUaagGCCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 76039 0.68 0.672678
Target:  5'- cCGAGCcCCUgGcgcggcUUCugCGGCUGgCGGGGg -3'
miRNA:   3'- -GCUCGaGGAgU------AAG--GCCGACgGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 3648 0.68 0.672678
Target:  5'- -cGGCgacccCCUCGUcaucugcgCCGGC-GCCGGGGc -3'
miRNA:   3'- gcUCGa----GGAGUAa-------GGCCGaCGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.