miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5805 3' -59.6 NC_001806.1 + 1657 0.7 0.515896
Target:  5'- uGGGCcuccUCCUCGcagaagUCCGGCgcGCCGGGc -3'
miRNA:   3'- gCUCG----AGGAGUa-----AGGCCGa-CGGCCCc -5'
5805 3' -59.6 NC_001806.1 + 2732 0.67 0.730971
Target:  5'- gGGGC-CCUCGgcgggCCGGCgcgacacgGCCacGGGGc -3'
miRNA:   3'- gCUCGaGGAGUaa---GGCCGa-------CGG--CCCC- -5'
5805 3' -59.6 NC_001806.1 + 3648 0.68 0.672678
Target:  5'- -cGGCgacccCCUCGUcaucugcgCCGGC-GCCGGGGc -3'
miRNA:   3'- gcUCGa----GGAGUAa-------GGCCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 4060 0.67 0.69232
Target:  5'- uCGGGCgCC-CAca-CGGCcGCCGGGGc -3'
miRNA:   3'- -GCUCGaGGaGUaagGCCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 4723 0.74 0.352489
Target:  5'- gGGGcCUCC-CGUUCgCGGCcccggGCCGGGGc -3'
miRNA:   3'- gCUC-GAGGaGUAAG-GCCGa----CGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 11367 0.67 0.730971
Target:  5'- gCGGGCUCCgacucUUCGGCgaugGCCGucaGGGa -3'
miRNA:   3'- -GCUCGAGGagua-AGGCCGa---CGGC---CCC- -5'
5805 3' -59.6 NC_001806.1 + 12936 0.66 0.767421
Target:  5'- uCGGGgUCUUCcggggcgaGUUCUGGCUGCguggcguUGGGGu -3'
miRNA:   3'- -GCUCgAGGAG--------UAAGGCCGACG-------GCCCC- -5'
5805 3' -59.6 NC_001806.1 + 20658 0.68 0.643002
Target:  5'- aCGGGCcCCcggCGUgCCGGC-GUCGGGGc -3'
miRNA:   3'- -GCUCGaGGa--GUAaGGCCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 21311 0.69 0.623165
Target:  5'- gCGGGCaCCgacg-CCGGCgaggacGCCGGGGa -3'
miRNA:   3'- -GCUCGaGGaguaaGGCCGa-----CGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 23109 0.69 0.603354
Target:  5'- gGGGC-CCUgGgccCCGcGCUGCCGcGGGa -3'
miRNA:   3'- gCUCGaGGAgUaa-GGC-CGACGGC-CCC- -5'
5805 3' -59.6 NC_001806.1 + 23926 0.66 0.795193
Target:  5'- gCGAGgaCCUgg--CCGGCggcgggGCCuGGGGg -3'
miRNA:   3'- -GCUCgaGGAguaaGGCCGa-----CGG-CCCC- -5'
5805 3' -59.6 NC_001806.1 + 27006 0.72 0.40839
Target:  5'- cCGGGCUCg--GUUCCGGC-GCCGGGu -3'
miRNA:   3'- -GCUCGAGgagUAAGGCCGaCGGCCCc -5'
5805 3' -59.6 NC_001806.1 + 30742 0.7 0.554286
Target:  5'- gGGGCcgCCUC-UUCC-GCcGCCGGGGc -3'
miRNA:   3'- gCUCGa-GGAGuAAGGcCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 33337 0.67 0.69232
Target:  5'- cCGAcGCcCCUUGgccgccCCGGCUGCaGGGGg -3'
miRNA:   3'- -GCU-CGaGGAGUaa----GGCCGACGgCCCC- -5'
5805 3' -59.6 NC_001806.1 + 34538 0.69 0.571843
Target:  5'- cCGGGC-CgCUCGUaagagccgcgacCCGGCcGCCGGGGa -3'
miRNA:   3'- -GCUCGaG-GAGUAa-----------GGCCGaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 37770 0.71 0.487821
Target:  5'- gCGGGCgCCUUucgcUCCGGg-GCCGGGGc -3'
miRNA:   3'- -GCUCGaGGAGua--AGGCCgaCGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 38113 0.67 0.711773
Target:  5'- gCGGGCcaCCUUGcccCCGuGCUGCuCGGGGg -3'
miRNA:   3'- -GCUCGa-GGAGUaa-GGC-CGACG-GCCCC- -5'
5805 3' -59.6 NC_001806.1 + 38635 0.67 0.730971
Target:  5'- cCGGGUgguggaugUCCUUAUacCCGuGgUGCCGGGGc -3'
miRNA:   3'- -GCUCG--------AGGAGUAa-GGC-CgACGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 43681 0.71 0.497102
Target:  5'- aCGGGCccuuggCCUCuccgCCuucggGGUUGCCGGGGg -3'
miRNA:   3'- -GCUCGa-----GGAGuaa-GG-----CCGACGGCCCC- -5'
5805 3' -59.6 NC_001806.1 + 50711 0.7 0.5446
Target:  5'- cCGGGCUCgUCcugcagCGGCUGCUGGGc -3'
miRNA:   3'- -GCUCGAGgAGuaag--GCCGACGGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.