miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5805 5' -55 NC_001806.1 + 31880 0.65 0.94954
Target:  5'- cCGC-CCgGACUGaCcUGGCCUcUGGCCg -3'
miRNA:   3'- -GCGaGG-CUGAC-GcACCGGAuAUUGGg -5'
5805 5' -55 NC_001806.1 + 93209 0.65 0.94954
Target:  5'- gGgUuuGugUGCGcGGCCUcaAGCCUc -3'
miRNA:   3'- gCgAggCugACGCaCCGGAuaUUGGG- -5'
5805 5' -55 NC_001806.1 + 50219 0.65 0.94954
Target:  5'- uGCUggacCgCGACUgucGCGUGGCC----GCCCg -3'
miRNA:   3'- gCGA----G-GCUGA---CGCACCGGauauUGGG- -5'
5805 5' -55 NC_001806.1 + 17233 0.65 0.947841
Target:  5'- cCGCgUCGGCcugucuccccgccgUGCGUGGCCUuacaaaucugcaaGUGcCCCa -3'
miRNA:   3'- -GCGaGGCUG--------------ACGCACCGGA-------------UAUuGGG- -5'
5805 5' -55 NC_001806.1 + 23925 0.66 0.945224
Target:  5'- gGCgaggaccuggCCGGCgGCGgGGCCUGggggGGCCg -3'
miRNA:   3'- gCGa---------GGCUGaCGCaCCGGAUa---UUGGg -5'
5805 5' -55 NC_001806.1 + 7461 0.66 0.945224
Target:  5'- cCGCgaaccacguaCGGCUcGCG-GGUCUGUAuaGCCCg -3'
miRNA:   3'- -GCGag--------GCUGA-CGCaCCGGAUAU--UGGG- -5'
5805 5' -55 NC_001806.1 + 106222 0.66 0.945224
Target:  5'- cCGcCUCCGuguuGCUGCGUucccgGGCCUggGUAACg- -3'
miRNA:   3'- -GC-GAGGC----UGACGCA-----CCGGA--UAUUGgg -5'
5805 5' -55 NC_001806.1 + 5441 0.66 0.945224
Target:  5'- gCGCUCCGugUggacgaucgggGCGUccucgGGCUcaUAUAGuCCCa -3'
miRNA:   3'- -GCGAGGCugA-----------CGCA-----CCGG--AUAUU-GGG- -5'
5805 5' -55 NC_001806.1 + 57738 0.66 0.945224
Target:  5'- cCGCUCCGggcgucuggaGCgGCGggacgGGCCgccguCCCg -3'
miRNA:   3'- -GCGAGGC----------UGaCGCa----CCGGauauuGGG- -5'
5805 5' -55 NC_001806.1 + 21486 0.66 0.945224
Target:  5'- aCGCagCCGACgccgccgGCGaccgGGCCcc-GGCCCg -3'
miRNA:   3'- -GCGa-GGCUGa------CGCa---CCGGauaUUGGG- -5'
5805 5' -55 NC_001806.1 + 58481 0.66 0.940673
Target:  5'- aGCUCgaACgugguggGCGUGGCaCUAUcGGCCCc -3'
miRNA:   3'- gCGAGgcUGa------CGCACCG-GAUA-UUGGG- -5'
5805 5' -55 NC_001806.1 + 3339 0.66 0.940673
Target:  5'- -cCUCCGGCcGCGgggggcuggcgGGCCg--GGCCCc -3'
miRNA:   3'- gcGAGGCUGaCGCa----------CCGGauaUUGGG- -5'
5805 5' -55 NC_001806.1 + 57015 0.66 0.935884
Target:  5'- gCGCccagugCCaggcACUGgGUGGCCg--GGCCCg -3'
miRNA:   3'- -GCGa-----GGc---UGACgCACCGGauaUUGGG- -5'
5805 5' -55 NC_001806.1 + 9860 0.66 0.935884
Target:  5'- gCGUUCCGguACUGCGccgcggugcugaUGGUaaUGUGGCCCc -3'
miRNA:   3'- -GCGAGGC--UGACGC------------ACCGg-AUAUUGGG- -5'
5805 5' -55 NC_001806.1 + 96461 0.66 0.932896
Target:  5'- gGCUCCGAguucccccggcacgcCUGgGgucgcGGCCgc-GACCCa -3'
miRNA:   3'- gCGAGGCU---------------GACgCa----CCGGauaUUGGG- -5'
5805 5' -55 NC_001806.1 + 97577 0.66 0.930857
Target:  5'- cCGCUCUcGC-GCGUGGaCCUGgggGACUg -3'
miRNA:   3'- -GCGAGGcUGaCGCACC-GGAUa--UUGGg -5'
5805 5' -55 NC_001806.1 + 87832 0.66 0.930857
Target:  5'- gCGCuUCUGGaaGUGgcucUGGCCUAUGuCCCa -3'
miRNA:   3'- -GCG-AGGCUgaCGC----ACCGGAUAUuGGG- -5'
5805 5' -55 NC_001806.1 + 106770 0.66 0.92505
Target:  5'- gGCUCCGcGCUggacgccuccgccGCGUGGgCggcuACCCg -3'
miRNA:   3'- gCGAGGC-UGA-------------CGCACCgGauauUGGG- -5'
5805 5' -55 NC_001806.1 + 20389 0.67 0.920082
Target:  5'- gGCgUCCGGCggGCG-GGaCCggggGGCCCg -3'
miRNA:   3'- gCG-AGGCUGa-CGCaCC-GGaua-UUGGG- -5'
5805 5' -55 NC_001806.1 + 22428 0.67 0.918384
Target:  5'- cCGCUUCGGCUggggccuggcgcacGCGgcGGCCgccGUGGCCa -3'
miRNA:   3'- -GCGAGGCUGA--------------CGCa-CCGGa--UAUUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.