miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5812 3' -59.6 NC_001806.1 + 22957 0.66 0.784239
Target:  5'- cGCaCGCCGAcgcgCCCc--GCcuGCGCGCg -3'
miRNA:   3'- -CG-GCGGCUca--GGGuuaCGucCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 79658 0.66 0.784239
Target:  5'- uGCCGCUucuucGUCCgGGUcGCGcGCGCGCc -3'
miRNA:   3'- -CGGCGGcu---CAGGgUUA-CGUcCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 24507 0.66 0.784239
Target:  5'- aCCGCCGGG-CCguGcUGCcGGCGCu- -3'
miRNA:   3'- cGGCGGCUCaGGguU-ACGuCCGCGcg -5'
5812 3' -59.6 NC_001806.1 + 56859 0.66 0.784239
Target:  5'- gGCCGCggCGGG-CCCAccGauccacCAGaGCGCGCg -3'
miRNA:   3'- -CGGCG--GCUCaGGGUuaC------GUC-CGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 97312 0.66 0.783342
Target:  5'- cGCCGCCGAccgCuUCAA-GCAGGUcgacggcuucuacGCGCg -3'
miRNA:   3'- -CGGCGGCUca-G-GGUUaCGUCCG-------------CGCG- -5'
5812 3' -59.6 NC_001806.1 + 49283 0.66 0.778837
Target:  5'- cGCCGUcgacgggaaggcccgCGAG-CCCGAcGaC-GGCGCGCg -3'
miRNA:   3'- -CGGCG---------------GCUCaGGGUUaC-GuCCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 132625 0.66 0.77521
Target:  5'- gGCCacgGCCGAGUcggcacgggaCCUggUGCgcgGGGC-CGCg -3'
miRNA:   3'- -CGG---CGGCUCA----------GGGuuACG---UCCGcGCG- -5'
5812 3' -59.6 NC_001806.1 + 91194 0.66 0.77521
Target:  5'- cGCCGUCGGGgcguaCCu-----GGCGCGCg -3'
miRNA:   3'- -CGGCGGCUCag---GGuuacguCCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 2320 0.66 0.77521
Target:  5'- cGCCGCCGgccaGGUCCUcgcccgGCAgcGGCGaguacaGCa -3'
miRNA:   3'- -CGGCGGC----UCAGGGuua---CGU--CCGCg-----CG- -5'
5812 3' -59.6 NC_001806.1 + 72008 0.66 0.77521
Target:  5'- uCC-UCGAGUaCCCAG---GGGCGCGCg -3'
miRNA:   3'- cGGcGGCUCA-GGGUUacgUCCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 69683 0.66 0.77521
Target:  5'- uCUGgCGAG-CCUGcgGCGGGCGCu- -3'
miRNA:   3'- cGGCgGCUCaGGGUuaCGUCCGCGcg -5'
5812 3' -59.6 NC_001806.1 + 79443 0.66 0.77339
Target:  5'- aCCGCCGAucaguccguccccacGUCCCAGUGUgcaccgcggcccccuGGGC-CGg -3'
miRNA:   3'- cGGCGGCU---------------CAGGGUUACG---------------UCCGcGCg -5'
5812 3' -59.6 NC_001806.1 + 89316 0.66 0.76606
Target:  5'- gGCCGCCGAcuuuccUCCgGGggacaGCGGGC-CGCc -3'
miRNA:   3'- -CGGCGGCUc-----AGGgUUa----CGUCCGcGCG- -5'
5812 3' -59.6 NC_001806.1 + 122336 0.66 0.76606
Target:  5'- uGgCGCCGGGggaCGAgaaacacGguGGCGCGCu -3'
miRNA:   3'- -CgGCGGCUCaggGUUa------CguCCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 76235 0.66 0.76606
Target:  5'- cGCCcuCCGGG--CCGAcGCGcGGCGCGCg -3'
miRNA:   3'- -CGGc-GGCUCagGGUUaCGU-CCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 131110 0.66 0.76606
Target:  5'- aGCaCGCagaCGuuUCCCGggGCGGGgCGCGUu -3'
miRNA:   3'- -CG-GCG---GCucAGGGUuaCGUCC-GCGCG- -5'
5812 3' -59.6 NC_001806.1 + 29159 0.66 0.76606
Target:  5'- cCCG-CGAGgaagacCCCGGcaguUGCGGGgGCGCc -3'
miRNA:   3'- cGGCgGCUCa-----GGGUU----ACGUCCgCGCG- -5'
5812 3' -59.6 NC_001806.1 + 142271 0.66 0.763293
Target:  5'- uCCGuuGguaGGUCCCAaauccuGUcgcccuacacagcgGCGGGUGCGCg -3'
miRNA:   3'- cGGCggC---UCAGGGU------UA--------------CGUCCGCGCG- -5'
5812 3' -59.6 NC_001806.1 + 88951 0.66 0.757728
Target:  5'- cCCGCCGGGgcgugguccacgccgCCCca--CAGGCGCGa -3'
miRNA:   3'- cGGCGGCUCa--------------GGGuuacGUCCGCGCg -5'
5812 3' -59.6 NC_001806.1 + 99956 0.66 0.756797
Target:  5'- -nCGCCGGGagUCGAccccGCGcGGCGCGCc -3'
miRNA:   3'- cgGCGGCUCagGGUUa---CGU-CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.