miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5812 5' -55.8 NC_001806.1 + 29930 0.66 0.895604
Target:  5'- -aGCAgcGGCGgGGCGGCUCCCGc-- -3'
miRNA:   3'- gaCGUguCCGUgUUGUCGAGGGUcug -5'
5812 5' -55.8 NC_001806.1 + 55137 0.66 0.895604
Target:  5'- -cGUGCGGGCugucCAucCGGC-CCCAGGCc -3'
miRNA:   3'- gaCGUGUCCGu---GUu-GUCGaGGGUCUG- -5'
5812 5' -55.8 NC_001806.1 + 2395 0.66 0.891549
Target:  5'- -gGCGCAuccaggccgccaugcGGCGCAGCGGg-CCCgAGGCg -3'
miRNA:   3'- gaCGUGU---------------CCGUGUUGUCgaGGG-UCUG- -5'
5812 5' -55.8 NC_001806.1 + 78378 0.66 0.888798
Target:  5'- -cGCcCAGGCGCuGGCGGCggugagcgUCCuCGGGCg -3'
miRNA:   3'- gaCGuGUCCGUG-UUGUCG--------AGG-GUCUG- -5'
5812 5' -55.8 NC_001806.1 + 56286 0.66 0.888798
Target:  5'- cCUGUGCAGGCgACGccGgAGC-CCCAGcACc -3'
miRNA:   3'- -GACGUGUCCG-UGU--UgUCGaGGGUC-UG- -5'
5812 5' -55.8 NC_001806.1 + 100495 0.66 0.888798
Target:  5'- cCUGC---GGCGCGGCAGCgaucgagCCGGGCg -3'
miRNA:   3'- -GACGuguCCGUGUUGUCGag-----GGUCUG- -5'
5812 5' -55.8 NC_001806.1 + 94167 0.66 0.888798
Target:  5'- -gGUGCGGGCGCuGCGGCgucgUCUgAGGCc -3'
miRNA:   3'- gaCGUGUCCGUGuUGUCG----AGGgUCUG- -5'
5812 5' -55.8 NC_001806.1 + 78034 0.66 0.881757
Target:  5'- gUGCugGuGGCGCugguggcCAGCUcCCCGGAa -3'
miRNA:   3'- gACGugU-CCGUGuu-----GUCGA-GGGUCUg -5'
5812 5' -55.8 NC_001806.1 + 151520 0.66 0.881757
Target:  5'- aCUGUGCGGuuGgGACGGCgcccgugggCCCGGGCg -3'
miRNA:   3'- -GACGUGUCcgUgUUGUCGa--------GGGUCUG- -5'
5812 5' -55.8 NC_001806.1 + 85991 0.66 0.881757
Target:  5'- -gGUcgGCAGGCgACGGCGuCUCCCGGGg -3'
miRNA:   3'- gaCG--UGUCCG-UGUUGUcGAGGGUCUg -5'
5812 5' -55.8 NC_001806.1 + 36746 0.66 0.881757
Target:  5'- aUGCGCccGGGCGgGA-AGCUCCUaaGGGCa -3'
miRNA:   3'- gACGUG--UCCGUgUUgUCGAGGG--UCUG- -5'
5812 5' -55.8 NC_001806.1 + 102523 0.66 0.881757
Target:  5'- -gGC-CAGGCACGccagguagcgggGCAGCcggCCCAG-Ca -3'
miRNA:   3'- gaCGuGUCCGUGU------------UGUCGa--GGGUCuG- -5'
5812 5' -55.8 NC_001806.1 + 23540 0.66 0.874487
Target:  5'- cCUGgGCGgcuGGCgGCGGCAGCcCCCGGGg -3'
miRNA:   3'- -GACgUGU---CCG-UGUUGUCGaGGGUCUg -5'
5812 5' -55.8 NC_001806.1 + 94673 0.66 0.872261
Target:  5'- uCUGUaaccacgucacccaGCAGGCGCAGguGCggCUGGACg -3'
miRNA:   3'- -GACG--------------UGUCCGUGUUguCGagGGUCUG- -5'
5812 5' -55.8 NC_001806.1 + 51272 0.66 0.866991
Target:  5'- -cGCGC-GGCGCG--AGCUCCCugcGGCu -3'
miRNA:   3'- gaCGUGuCCGUGUugUCGAGGGu--CUG- -5'
5812 5' -55.8 NC_001806.1 + 105891 0.66 0.866991
Target:  5'- aUGUACuGGCGCGACAcGaaCaCCGGGCg -3'
miRNA:   3'- gACGUGuCCGUGUUGU-CgaG-GGUCUG- -5'
5812 5' -55.8 NC_001806.1 + 35813 0.66 0.866991
Target:  5'- -cGCAaaacuCGGGCGCGugGCGGCcUCCUAGGg -3'
miRNA:   3'- gaCGU-----GUCCGUGU--UGUCG-AGGGUCUg -5'
5812 5' -55.8 NC_001806.1 + 50709 0.66 0.866229
Target:  5'- -cGC-CGGGCucguccuGCAGCGGCUgCUGGGCu -3'
miRNA:   3'- gaCGuGUCCG-------UGUUGUCGAgGGUCUG- -5'
5812 5' -55.8 NC_001806.1 + 100976 0.66 0.866229
Target:  5'- -gGCAgguaguuggugauCAGGUACAACAGgcgcucCUCCCGGGa -3'
miRNA:   3'- gaCGU-------------GUCCGUGUUGUC------GAGGGUCUg -5'
5812 5' -55.8 NC_001806.1 + 65255 0.67 0.859276
Target:  5'- -cGCgACAGGaACAACAGCcgccaCCCAGGg -3'
miRNA:   3'- gaCG-UGUCCgUGUUGUCGa----GGGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.