miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5815 5' -55.4 NC_001806.1 + 94495 0.66 0.929278
Target:  5'- -cGCggCGCC-ACCGCCGCGcuggaGCGCGUu -3'
miRNA:   3'- caUGa-GCGGcUGGUGGUGUa----CGUGCA- -5'
5815 5' -55.4 NC_001806.1 + 24641 0.66 0.929278
Target:  5'- -gGCgCGCCGcuGCgGCC-CGUGUACGUg -3'
miRNA:   3'- caUGaGCGGC--UGgUGGuGUACGUGCA- -5'
5815 5' -55.4 NC_001806.1 + 3036 0.66 0.929278
Target:  5'- -cGCUgGCCGccGCCGCCAgCAggggGCGCa- -3'
miRNA:   3'- caUGAgCGGC--UGGUGGU-GUa---CGUGca -5'
5815 5' -55.4 NC_001806.1 + 18855 0.66 0.926084
Target:  5'- ----cCGCCgGACaccugcagcaaacggCACCACGUGCGCGg -3'
miRNA:   3'- caugaGCGG-CUG---------------GUGGUGUACGUGCa -5'
5815 5' -55.4 NC_001806.1 + 85283 0.66 0.923906
Target:  5'- cGUGUUgGCCGACCGCCACA---ACGc -3'
miRNA:   3'- -CAUGAgCGGCUGGUGGUGUacgUGCa -5'
5815 5' -55.4 NC_001806.1 + 4383 0.66 0.918292
Target:  5'- gGUcCUCGCCG-CCGCCcgggGCuuggGCGCGg -3'
miRNA:   3'- -CAuGAGCGGCuGGUGG----UGua--CGUGCa -5'
5815 5' -55.4 NC_001806.1 + 112609 0.66 0.918292
Target:  5'- -gACgaCGUgGGCCGCCACcUGCugGa -3'
miRNA:   3'- caUGa-GCGgCUGGUGGUGuACGugCa -5'
5815 5' -55.4 NC_001806.1 + 10712 0.66 0.918292
Target:  5'- cGUACgccaUCGCCagcggGACCggaGCgCGCAUGCACGc -3'
miRNA:   3'- -CAUG----AGCGG-----CUGG---UG-GUGUACGUGCa -5'
5815 5' -55.4 NC_001806.1 + 24426 0.66 0.912436
Target:  5'- uGUGC-CGCgGcggcaacgugcGCUACCGCGUGCGCa- -3'
miRNA:   3'- -CAUGaGCGgC-----------UGGUGGUGUACGUGca -5'
5815 5' -55.4 NC_001806.1 + 70963 0.66 0.900006
Target:  5'- -aGCUCgGCCGACCAgCGCGc-CGCGg -3'
miRNA:   3'- caUGAG-CGGCUGGUgGUGUacGUGCa -5'
5815 5' -55.4 NC_001806.1 + 97312 0.66 0.900006
Target:  5'- -cGC-CGCCGACCGCUuCAaGCAgGUc -3'
miRNA:   3'- caUGaGCGGCUGGUGGuGUaCGUgCA- -5'
5815 5' -55.4 NC_001806.1 + 73696 0.66 0.900006
Target:  5'- -aACUCGCgGACCuggaGCUGCAgcuucGCGCGg -3'
miRNA:   3'- caUGAGCGgCUGG----UGGUGUa----CGUGCa -5'
5815 5' -55.4 NC_001806.1 + 7753 0.66 0.900006
Target:  5'- gGUGuCUCGCaUGugCGCUgcaaACGUGCGCGa -3'
miRNA:   3'- -CAU-GAGCG-GCugGUGG----UGUACGUGCa -5'
5815 5' -55.4 NC_001806.1 + 136702 0.66 0.900006
Target:  5'- -gAC-CGCgGGCCGCCACGUGgC-CGa -3'
miRNA:   3'- caUGaGCGgCUGGUGGUGUAC-GuGCa -5'
5815 5' -55.4 NC_001806.1 + 79680 0.67 0.893436
Target:  5'- -cGCgcgCGCCGA-CACCGCcggGCACGc -3'
miRNA:   3'- caUGa--GCGGCUgGUGGUGua-CGUGCa -5'
5815 5' -55.4 NC_001806.1 + 106777 0.67 0.893436
Target:  5'- -cGCUggaCGCCu-CCGCCGCGUGgGCGg -3'
miRNA:   3'- caUGA---GCGGcuGGUGGUGUACgUGCa -5'
5815 5' -55.4 NC_001806.1 + 73288 0.67 0.89142
Target:  5'- cGUGCUcCGCCGcCCuggcccgcgaggucGCCGCGUGUucGCGg -3'
miRNA:   3'- -CAUGA-GCGGCuGG--------------UGGUGUACG--UGCa -5'
5815 5' -55.4 NC_001806.1 + 89472 0.67 0.886634
Target:  5'- -gGCUCGCCcgGGCCGgCAUGUGCAa-- -3'
miRNA:   3'- caUGAGCGG--CUGGUgGUGUACGUgca -5'
5815 5' -55.4 NC_001806.1 + 108850 0.67 0.886634
Target:  5'- cUGCUCGgcugugguuCCGGCCGCCA---GCGCGUc -3'
miRNA:   3'- cAUGAGC---------GGCUGGUGGUguaCGUGCA- -5'
5815 5' -55.4 NC_001806.1 + 4622 0.67 0.886634
Target:  5'- ----aCGCCGaugGCCGCCACcgGC-CGUg -3'
miRNA:   3'- caugaGCGGC---UGGUGGUGuaCGuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.