Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5818 | 3' | -54.8 | NC_001806.1 | + | 129688 | 0.66 | 0.948089 |
Target: 5'- -gCCCGUCUccgGACGCCucuccggaggcccGGGGGGc -3' miRNA: 3'- uaGGGUAGAua-CUGUGGcaa----------CCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 20374 | 0.66 | 0.943208 |
Target: 5'- cGUCCCGUUggucccGGCGuCCGgcGGGcGGGa -3' miRNA: 3'- -UAGGGUAGaua---CUGU-GGCaaCCC-CCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 6269 | 0.66 | 0.93359 |
Target: 5'- gAUCgCAUCggaaaggGACACgCGgacgcgGGGGGGa -3' miRNA: 3'- -UAGgGUAGaua----CUGUG-GCaa----CCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 28195 | 0.67 | 0.905305 |
Target: 5'- --gCCAugUCUggGGCGCCauaUUGGGGGGc -3' miRNA: 3'- uagGGU--AGAuaCUGUGGc--AACCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 36764 | 0.67 | 0.892313 |
Target: 5'- cUCCUAagggcaCUAUGACACCGgccuUGGaacGGGGa -3' miRNA: 3'- uAGGGUa-----GAUACUGUGGCa---ACC---CCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 14118 | 0.68 | 0.863585 |
Target: 5'- -cCCCAUCccccugccgGACAUgGuUUGGGGGGc -3' miRNA: 3'- uaGGGUAGaua------CUGUGgC-AACCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 56648 | 0.69 | 0.812528 |
Target: 5'- -cCUCAUCggccggcggcccGUGGgAUCGUUGGGGGGu -3' miRNA: 3'- uaGGGUAGa-----------UACUgUGGCAACCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 111316 | 0.69 | 0.808994 |
Target: 5'- -aCCCGUCgcguucuaacggggGUGGgGCgGggGGGGGGg -3' miRNA: 3'- uaGGGUAGa-------------UACUgUGgCaaCCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 50089 | 0.72 | 0.689388 |
Target: 5'- cGUCCCGUCgg-GGCcgcggccguGCCGUUacugagcgcGGGGGGg -3' miRNA: 3'- -UAGGGUAGauaCUG---------UGGCAA---------CCCCCC- -5' |
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5818 | 3' | -54.8 | NC_001806.1 | + | 10762 | 0.77 | 0.404546 |
Target: 5'- --aCCGUCUcgGGCACCugcUUGGGGGGc -3' miRNA: 3'- uagGGUAGAuaCUGUGGc--AACCCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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