miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5818 5' -60.8 NC_001806.1 + 107038 0.66 0.733497
Target:  5'- cGCCCGC--GGGGCCgCGggcUGUGCcGCg -3'
miRNA:   3'- uCGGGCGgcUCCUGGgGC---ACAUGuCG- -5'
5818 5' -60.8 NC_001806.1 + 131285 0.66 0.733497
Target:  5'- uGCCCGCgUGGGGGCgCUGUuUGC-GCa -3'
miRNA:   3'- uCGGGCG-GCUCCUGgGGCAcAUGuCG- -5'
5818 5' -60.8 NC_001806.1 + 131202 0.66 0.733497
Target:  5'- cGCCUGCC--GGACCCacag-GCAGCu -3'
miRNA:   3'- uCGGGCGGcuCCUGGGgcacaUGUCG- -5'
5818 5' -60.8 NC_001806.1 + 37077 0.66 0.733497
Target:  5'- aGGCCCGCCaugcAGG-CCCCGgggagGUAgAaauGCa -3'
miRNA:   3'- -UCGGGCGGc---UCCuGGGGCa----CAUgU---CG- -5'
5818 5' -60.8 NC_001806.1 + 64964 0.66 0.724
Target:  5'- cGCCCggGCCGGGGGUCCCGgg-GCAa- -3'
miRNA:   3'- uCGGG--CGGCUCCUGGGGCacaUGUcg -5'
5818 5' -60.8 NC_001806.1 + 46213 0.66 0.724
Target:  5'- aGGCCC-CCGcGG-CCCCG---GCGGCg -3'
miRNA:   3'- -UCGGGcGGCuCCuGGGGCacaUGUCG- -5'
5818 5' -60.8 NC_001806.1 + 55783 0.66 0.724
Target:  5'- -uCCCGCgGugaucguGGGCCCgGUGgagGCAGUu -3'
miRNA:   3'- ucGGGCGgCu------CCUGGGgCACa--UGUCG- -5'
5818 5' -60.8 NC_001806.1 + 9775 0.66 0.724
Target:  5'- gGGCgCGUgGggaGGGGCCCCGacGUGCGGg -3'
miRNA:   3'- -UCGgGCGgC---UCCUGGGGCa-CAUGUCg -5'
5818 5' -60.8 NC_001806.1 + 21516 0.66 0.724
Target:  5'- cGGCCCGgggccgcgaaCGGGaGGCCCCGcuacGCGGCg -3'
miRNA:   3'- -UCGGGCg---------GCUC-CUGGGGCaca-UGUCG- -5'
5818 5' -60.8 NC_001806.1 + 148118 0.66 0.723046
Target:  5'- cGGCCgGCUGGGGggcugcgugagacGCCCCGcccGUcacggggggcGCGGCg -3'
miRNA:   3'- -UCGGgCGGCUCC-------------UGGGGCa--CA----------UGUCG- -5'
5818 5' -60.8 NC_001806.1 + 89578 0.66 0.71443
Target:  5'- cGGCCgGCCGGgcuuauGGACCgCCG---GCGGCc -3'
miRNA:   3'- -UCGGgCGGCU------CCUGG-GGCacaUGUCG- -5'
5818 5' -60.8 NC_001806.1 + 79176 0.66 0.71443
Target:  5'- gAGCUauucCCGGGGcAUCCgGUGUAcCAGCg -3'
miRNA:   3'- -UCGGgc--GGCUCC-UGGGgCACAU-GUCG- -5'
5818 5' -60.8 NC_001806.1 + 34818 0.66 0.71443
Target:  5'- aGGCCCGCCcauccGcGGCCCCucccgGCAGCc -3'
miRNA:   3'- -UCGGGCGGcu---C-CUGGGGcaca-UGUCG- -5'
5818 5' -60.8 NC_001806.1 + 151554 0.66 0.71443
Target:  5'- cGGCCgggggCGgCGGGGGCCgCGaUGgcgGCGGCg -3'
miRNA:   3'- -UCGG-----GCgGCUCCUGGgGC-ACa--UGUCG- -5'
5818 5' -60.8 NC_001806.1 + 147042 0.66 0.71443
Target:  5'- cGCCCGCgGGGacGGCCCCGgaaGUcuccGCguGGCg -3'
miRNA:   3'- uCGGGCGgCUC--CUGGGGCa--CA----UG--UCG- -5'
5818 5' -60.8 NC_001806.1 + 105349 0.66 0.71443
Target:  5'- cGCCCGCCGgcugccGGGACgCCC---UGCuGCa -3'
miRNA:   3'- uCGGGCGGC------UCCUG-GGGcacAUGuCG- -5'
5818 5' -60.8 NC_001806.1 + 145284 0.66 0.71443
Target:  5'- cGGCCaCGCCacucgcGGGuGGgCUCGUGuUACAGCa -3'
miRNA:   3'- -UCGG-GCGG------CUC-CUgGGGCAC-AUGUCG- -5'
5818 5' -60.8 NC_001806.1 + 21283 0.66 0.713469
Target:  5'- cGCCCGgCgggacggGAGGGCCCCc---GCGGCg -3'
miRNA:   3'- uCGGGCgG-------CUCCUGGGGcacaUGUCG- -5'
5818 5' -60.8 NC_001806.1 + 118887 0.66 0.704794
Target:  5'- uGCCCGCggaugcggUGGGGGagcuucuggcCCCCGUcGUGcCGGCa -3'
miRNA:   3'- uCGGGCG--------GCUCCU----------GGGGCA-CAU-GUCG- -5'
5818 5' -60.8 NC_001806.1 + 23096 0.66 0.704794
Target:  5'- gAGCCugguCGCCGGGGcccuggGCCCCGcGcUGCcGCg -3'
miRNA:   3'- -UCGG----GCGGCUCC------UGGGGCaC-AUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.