miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5824 3' -52.8 NC_001806.1 + 102299 0.66 0.982926
Target:  5'- uCGUGGUGcgccacGCCGUCGGGGUUaacgugGGUAc-- -3'
miRNA:   3'- -GCAUUAC------CGGCAGCCUCAG------CCGUuuc -5'
5824 3' -52.8 NC_001806.1 + 125798 0.66 0.978649
Target:  5'- gGUAugGUGGaCCG-CGGAcucgGUCGGCAc-- -3'
miRNA:   3'- gCAU--UACC-GGCaGCCU----CAGCCGUuuc -5'
5824 3' -52.8 NC_001806.1 + 44792 0.66 0.976234
Target:  5'- gGUGAgGGCCGggGGGGUCGcCAGGa -3'
miRNA:   3'- gCAUUaCCGGCagCCUCAGCcGUUUc -5'
5824 3' -52.8 NC_001806.1 + 132618 0.66 0.973626
Target:  5'- cCGUGccGGCCacggCcGAGUCGGCAcGGg -3'
miRNA:   3'- -GCAUuaCCGGca--GcCUCAGCCGUuUC- -5'
5824 3' -52.8 NC_001806.1 + 76923 0.67 0.970815
Target:  5'- -----aGGCCGaggCGGAGUgGGaCGAGGu -3'
miRNA:   3'- gcauuaCCGGCa--GCCUCAgCC-GUUUC- -5'
5824 3' -52.8 NC_001806.1 + 147033 0.67 0.967797
Target:  5'- gCGUGA-GGCCGcccgCGGGGaCGGCcccgGAAGu -3'
miRNA:   3'- -GCAUUaCCGGCa---GCCUCaGCCG----UUUC- -5'
5824 3' -52.8 NC_001806.1 + 11825 0.67 0.967797
Target:  5'- gGUGGUGGUCGagGGGGUggaGGCcuGGu -3'
miRNA:   3'- gCAUUACCGGCagCCUCAg--CCGuuUC- -5'
5824 3' -52.8 NC_001806.1 + 121809 0.67 0.964563
Target:  5'- -----aGGUCGUCGGGGgacggugCGGCGcGGa -3'
miRNA:   3'- gcauuaCCGGCAGCCUCa------GCCGUuUC- -5'
5824 3' -52.8 NC_001806.1 + 89906 0.67 0.961109
Target:  5'- gCGUugccGGCCGcCGGGGuucaUCGGCGAc- -3'
miRNA:   3'- -GCAuua-CCGGCaGCCUC----AGCCGUUuc -5'
5824 3' -52.8 NC_001806.1 + 54881 0.67 0.957428
Target:  5'- ----cUGGCCGccgcagccUCGGAGgucaCGGUAGAGa -3'
miRNA:   3'- gcauuACCGGC--------AGCCUCa---GCCGUUUC- -5'
5824 3' -52.8 NC_001806.1 + 4832 0.68 0.930363
Target:  5'- gCGgcGaGGCCG-CGGGGUCgGGCGucGg -3'
miRNA:   3'- -GCauUaCCGGCaGCCUCAG-CCGUuuC- -5'
5824 3' -52.8 NC_001806.1 + 120327 0.69 0.924999
Target:  5'- aCGg---GGCgGUCGGGGgCGGCGGGu -3'
miRNA:   3'- -GCauuaCCGgCAGCCUCaGCCGUUUc -5'
5824 3' -52.8 NC_001806.1 + 151279 0.69 0.907432
Target:  5'- gGUGggGGCCGgggcCGGGGggCGGCGGc- -3'
miRNA:   3'- gCAUuaCCGGCa---GCCUCa-GCCGUUuc -5'
5824 3' -52.8 NC_001806.1 + 37744 0.69 0.907432
Target:  5'- gCGUGGUGG-CGUCgauGGuGUCGGCGGc- -3'
miRNA:   3'- -GCAUUACCgGCAG---CCuCAGCCGUUuc -5'
5824 3' -52.8 NC_001806.1 + 3506 0.69 0.907432
Target:  5'- uCGgcGUGGCgggcggCGUCGGGGUCGucgccccccGCGGGGg -3'
miRNA:   3'- -GCauUACCG------GCAGCCUCAGC---------CGUUUC- -5'
5824 3' -52.8 NC_001806.1 + 4992 0.69 0.901088
Target:  5'- uCGUGggGGUgGUCGGGGUCguGGUcgGGg -3'
miRNA:   3'- -GCAUuaCCGgCAGCCUCAG--CCGuuUC- -5'
5824 3' -52.8 NC_001806.1 + 65623 0.7 0.894505
Target:  5'- aCGUGGUGGCCGUgggCGaGAGgggcccCGGCGGc- -3'
miRNA:   3'- -GCAUUACCGGCA---GC-CUCa-----GCCGUUuc -5'
5824 3' -52.8 NC_001806.1 + 128881 0.7 0.873354
Target:  5'- uCGUGggGGgCG-CGGAGUCGGgAGAu -3'
miRNA:   3'- -GCAUuaCCgGCaGCCUCAGCCgUUUc -5'
5824 3' -52.8 NC_001806.1 + 151541 0.7 0.873354
Target:  5'- cCGUGGgcccgGGCgGcCGGGGgCGGCGGGGg -3'
miRNA:   3'- -GCAUUa----CCGgCaGCCUCaGCCGUUUC- -5'
5824 3' -52.8 NC_001806.1 + 33975 0.7 0.865852
Target:  5'- uCGUGcgGGCCG--GGGGUCgccggGGCAGGGg -3'
miRNA:   3'- -GCAUuaCCGGCagCCUCAG-----CCGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.