miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5827 5' -55.2 NC_001806.1 + 104560 0.66 0.918367
Target:  5'- ---cUGGugGCCCUGgGU-UCGCGCGa -3'
miRNA:   3'- caguAUCugCGGGACgCGcAGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 17616 0.67 0.900007
Target:  5'- gGUCGUGGACGCCgUG-GCGUgcuuccgacugcUGCACc -3'
miRNA:   3'- -CAGUAUCUGCGGgACgCGCA------------GUGUGu -5'
5827 5' -55.2 NC_001806.1 + 29774 0.67 0.900007
Target:  5'- ----cGGACGCCCcGCGCcccccCACGCAg -3'
miRNA:   3'- caguaUCUGCGGGaCGCGca---GUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 24567 0.67 0.900007
Target:  5'- -cCAUGG-CGCCCgGCGCGcCGgACu -3'
miRNA:   3'- caGUAUCuGCGGGaCGCGCaGUgUGu -5'
5827 5' -55.2 NC_001806.1 + 44637 0.67 0.893408
Target:  5'- -gCAUAGAcgagggacCGCCCUcgGCGUCGCGCc -3'
miRNA:   3'- caGUAUCU--------GCGGGAcgCGCAGUGUGu -5'
5827 5' -55.2 NC_001806.1 + 148135 0.67 0.879513
Target:  5'- -gCGUgAGACGCCCcGCcCGUCACGgGg -3'
miRNA:   3'- caGUA-UCUGCGGGaCGcGCAGUGUgU- -5'
5827 5' -55.2 NC_001806.1 + 4078 0.68 0.840931
Target:  5'- -gCcgGGGCGCCCgagGCcucgaaccgGCGUCGCGCc -3'
miRNA:   3'- caGuaUCUGCGGGa--CG---------CGCAGUGUGu -5'
5827 5' -55.2 NC_001806.1 + 3226 0.68 0.840107
Target:  5'- -gCGcAGGCGCaugagcaCCaGCGCGUCGCGCAc -3'
miRNA:   3'- caGUaUCUGCG-------GGaCGCGCAGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 80995 0.69 0.8154
Target:  5'- gGUCGUAG-CGCCCUG-GCGgUACugAu -3'
miRNA:   3'- -CAGUAUCuGCGGGACgCGCaGUGugU- -5'
5827 5' -55.2 NC_001806.1 + 140123 0.69 0.788338
Target:  5'- -cCAgaggAGACGCCagGCGCGgCACACGg -3'
miRNA:   3'- caGUa---UCUGCGGgaCGCGCaGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 7677 0.69 0.779018
Target:  5'- cUC-UGGACGCCCggGCGC-UUGCGCAc -3'
miRNA:   3'- cAGuAUCUGCGGGa-CGCGcAGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 51410 0.69 0.769562
Target:  5'- -cCGUGGGCGCCUUGCGgcagcgcuccgaCGaCGCGCAg -3'
miRNA:   3'- caGUAUCUGCGGGACGC------------GCaGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 113822 0.7 0.759982
Target:  5'- cUCGUGugggacuguGACGCCCUGaUGCGgCGCGCGg -3'
miRNA:   3'- cAGUAU---------CUGCGGGAC-GCGCaGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 22193 0.7 0.750286
Target:  5'- --uGUGGGCGCCCgagcuggGCGaCGcCGCGCAg -3'
miRNA:   3'- cagUAUCUGCGGGa------CGC-GCaGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 76225 0.73 0.597329
Target:  5'- aUCGccUGGACGCCCUccgggccgacGCGCGgCGCGCGa -3'
miRNA:   3'- cAGU--AUCUGCGGGA----------CGCGCaGUGUGU- -5'
5827 5' -55.2 NC_001806.1 + 46642 0.74 0.536198
Target:  5'- cUCGaGGGCGUUCUGCgGCGUCGCGCc -3'
miRNA:   3'- cAGUaUCUGCGGGACG-CGCAGUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.