miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 3' -57.3 NC_001806.1 + 21589 0.67 0.796934
Target:  5'- -cCCGCCGGCccagccGCCGcGGAGacgucgucacGGCCGGUGg -3'
miRNA:   3'- caGGUGGUUG------UGGC-CCUU----------CCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 115833 0.67 0.796934
Target:  5'- -cCCGCCGACaaGCCGcgauuccGAGGGCCGGg- -3'
miRNA:   3'- caGGUGGUUG--UGGCc------CUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 67206 0.67 0.78782
Target:  5'- gGUCUGCCGGCcuGgCGGGGcgcgcugguGGGCCAGg- -3'
miRNA:   3'- -CAGGUGGUUG--UgGCCCU---------UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 27285 0.67 0.78782
Target:  5'- -gCCGCCAGCGCggCGGGGcccGGCCAa-- -3'
miRNA:   3'- caGGUGGUUGUG--GCCCUu--CCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 3371 0.67 0.78782
Target:  5'- -cCgGCCAGCcCCGGGAcGGCCGc-- -3'
miRNA:   3'- caGgUGGUUGuGGCCCUuCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 98826 0.67 0.78782
Target:  5'- -cCCACCAAC-CCggacgcguccgGGGAGGGCgAGg- -3'
miRNA:   3'- caGGUGGUUGuGG-----------CCCUUCCGgUCau -5'
5828 3' -57.3 NC_001806.1 + 127098 0.67 0.778566
Target:  5'- -aUCACCGACGaCGGGGAGGUCGu-- -3'
miRNA:   3'- caGGUGGUUGUgGCCCUUCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 21497 0.67 0.769179
Target:  5'- -gCCGCCGGCgACCGGGccccggcccGGGGCCGc-- -3'
miRNA:   3'- caGGUGGUUG-UGGCCC---------UUCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 38069 0.67 0.769179
Target:  5'- cGUCCGCCGcggGCagGCUGGGcuuuGGUCGGUGg -3'
miRNA:   3'- -CAGGUGGU---UG--UGGCCCuu--CCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 131578 0.67 0.769179
Target:  5'- uUCCGCgAccCACCGGGcccGGCCAGg- -3'
miRNA:   3'- cAGGUGgUu-GUGGCCCuu-CCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 151261 0.67 0.759669
Target:  5'- -cCCggGCCcACGCCGGGcggugGGGGCCGGg- -3'
miRNA:   3'- caGG--UGGuUGUGGCCC-----UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 117800 0.68 0.753908
Target:  5'- -aCCGCCAcccggacgccgcgaaACGCCccGGGAugcaGGGCCAGg- -3'
miRNA:   3'- caGGUGGU---------------UGUGG--CCCU----UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 15155 0.68 0.750045
Target:  5'- cGUCC-UCAGCcaaCGGGAAGGCUGGg- -3'
miRNA:   3'- -CAGGuGGUUGug-GCCCUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 5577 0.68 0.740317
Target:  5'- -cCCGCCccGACGCCGGcacgccGggGGCCcGUGg -3'
miRNA:   3'- caGGUGG--UUGUGGCC------CuuCCGGuCAU- -5'
5828 3' -57.3 NC_001806.1 + 92913 0.68 0.730494
Target:  5'- gGUCCGCgCAGgGCgGGGcgggccugGAGGCCGGg- -3'
miRNA:   3'- -CAGGUG-GUUgUGgCCC--------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 66824 0.68 0.730494
Target:  5'- ---gGCCGGC-CCGGGu-GGCCGGUGu -3'
miRNA:   3'- caggUGGUUGuGGCCCuuCCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 50664 0.68 0.730494
Target:  5'- --gCACCGGCGCCGGGAcgacgcggcGGCCAc-- -3'
miRNA:   3'- cagGUGGUUGUGGCCCUu--------CCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 126865 0.68 0.720585
Target:  5'- uUCCGCCuggaggacGGCGCCGGGGcucucgGGGCCGc-- -3'
miRNA:   3'- cAGGUGG--------UUGUGGCCCU------UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 38404 0.68 0.720585
Target:  5'- cUCCGCCGGC-UCGGGggGGUCc--- -3'
miRNA:   3'- cAGGUGGUUGuGGCCCuuCCGGucau -5'
5828 3' -57.3 NC_001806.1 + 30627 0.68 0.7106
Target:  5'- cUCCGacUCAGgGCCGGGggGGCgCGGc- -3'
miRNA:   3'- cAGGU--GGUUgUGGCCCuuCCG-GUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.