miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 5' -59.4 NC_001806.1 + 56489 0.67 0.726733
Target:  5'- --cAUGGCCUCCGagaaacaccUGGGGCCacagcgGCAGGCc -3'
miRNA:   3'- acaUGUUGGAGGC---------GCCCCGG------CGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 37787 0.67 0.726733
Target:  5'- --cGgGGCCggggCGCGGGGguCCGCGGGCg -3'
miRNA:   3'- acaUgUUGGag--GCGCCCC--GGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 31091 0.67 0.726733
Target:  5'- --gGCGACCcggCUGC-GGGCCGCGGuCc -3'
miRNA:   3'- acaUGUUGGa--GGCGcCCCGGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 128519 0.67 0.726733
Target:  5'- cGUGCGGCauggCCaUGcGGGCCGCAGcCa -3'
miRNA:   3'- aCAUGUUGga--GGcGC-CCCGGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 84454 0.67 0.726733
Target:  5'- uUGUG-AGCCUgcuucgggCCGCGGGGCCcgAGGCc -3'
miRNA:   3'- -ACAUgUUGGA--------GGCGCCCCGGcgUCUG- -5'
5828 5' -59.4 NC_001806.1 + 147738 0.67 0.71701
Target:  5'- --cACGGCCgcgcgggggCgCGCGGgucccgacgcGGCCGCGGACg -3'
miRNA:   3'- acaUGUUGGa--------G-GCGCC----------CCGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 76320 0.67 0.71701
Target:  5'- --aACGACC-CgGCGGcGGCCGCcGAg -3'
miRNA:   3'- acaUGUUGGaGgCGCC-CCGGCGuCUg -5'
5828 5' -59.4 NC_001806.1 + 30842 0.67 0.71701
Target:  5'- ---uCGGCCcCCGCGcugcuucuGGGCCGCGGGg -3'
miRNA:   3'- acauGUUGGaGGCGC--------CCCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 42232 0.67 0.707216
Target:  5'- ---cCGGCCgCCGCGGccCCGCGGGCg -3'
miRNA:   3'- acauGUUGGaGGCGCCccGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 113090 0.67 0.707216
Target:  5'- cGUgGCGGCC-CCGgcCGGccccGCCGCAGACa -3'
miRNA:   3'- aCA-UGUUGGaGGC--GCCc---CGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 74874 0.67 0.706233
Target:  5'- --gGCGACC-CUGCGGGccucccuGCCgGCGGGCu -3'
miRNA:   3'- acaUGUUGGaGGCGCCC-------CGG-CGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 72488 0.67 0.697361
Target:  5'- --cGCAcCCcCUGCGGGGCgagauCGCGGGCc -3'
miRNA:   3'- acaUGUuGGaGGCGCCCCG-----GCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 94730 0.67 0.697361
Target:  5'- gGUACcuGCCccacgCCGCcGGGCUGuCGGACg -3'
miRNA:   3'- aCAUGu-UGGa----GGCGcCCCGGC-GUCUG- -5'
5828 5' -59.4 NC_001806.1 + 138879 0.67 0.687453
Target:  5'- --gACGACCUCgacguuauuuuCGCGGGGCU--GGACg -3'
miRNA:   3'- acaUGUUGGAG-----------GCGCCCCGGcgUCUG- -5'
5828 5' -59.4 NC_001806.1 + 49993 0.67 0.687453
Target:  5'- gUGUGCGggacgcGCCUUcaCGCGGaGGCgCGCGGGu -3'
miRNA:   3'- -ACAUGU------UGGAG--GCGCC-CCG-GCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 138835 0.67 0.687453
Target:  5'- --aGCAACUggggCCGCgggacgGGGGCC-CGGACg -3'
miRNA:   3'- acaUGUUGGa---GGCG------CCCCGGcGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 125832 0.67 0.677502
Target:  5'- --gGC-GCCUgacgcgCCGCGGGcccccggccGCCGCGGACg -3'
miRNA:   3'- acaUGuUGGA------GGCGCCC---------CGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 86377 0.67 0.677502
Target:  5'- --cACu-CCUCCGCGGGG-CGCucGGCu -3'
miRNA:   3'- acaUGuuGGAGGCGCCCCgGCGu-CUG- -5'
5828 5' -59.4 NC_001806.1 + 12372 0.67 0.677502
Target:  5'- -aUACcaGACUgaCCGUGGGGCCaCGGACa -3'
miRNA:   3'- acAUG--UUGGa-GGCGCCCCGGcGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 102153 0.67 0.677502
Target:  5'- cGUACAcguuGCCgUUCGCGaGGaGCCGCuGGAUa -3'
miRNA:   3'- aCAUGU----UGG-AGGCGC-CC-CGGCG-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.