miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5830 3' -61.8 NC_001806.1 + 5091 0.66 0.649744
Target:  5'- gUGGGCGGCggCCCGUcgGUGGgGCcCg -3'
miRNA:   3'- gACCCGCCGgaGGGCG--CACUgUGaGa -5'
5830 3' -61.8 NC_001806.1 + 6973 0.66 0.659584
Target:  5'- uCUGGGCGGaggguguuCCcCCC-CGUGGCuCUCg -3'
miRNA:   3'- -GACCCGCC--------GGaGGGcGCACUGuGAGa -5'
5830 3' -61.8 NC_001806.1 + 21295 0.67 0.590684
Target:  5'- -cGGGagGGCC-CCCGCGgcgGGCAC-Cg -3'
miRNA:   3'- gaCCCg-CCGGaGGGCGCa--CUGUGaGa -5'
5830 3' -61.8 NC_001806.1 + 24637 0.72 0.344132
Target:  5'- cCUGGGCGcGCCgcugcggCCCGUguacGUGGCGCUg- -3'
miRNA:   3'- -GACCCGC-CGGa------GGGCG----CACUGUGAga -5'
5830 3' -61.8 NC_001806.1 + 26948 0.71 0.390657
Target:  5'- uCUGGGCcucGGCCgCCCGCcUGGCGCg-- -3'
miRNA:   3'- -GACCCG---CCGGaGGGCGcACUGUGaga -5'
5830 3' -61.8 NC_001806.1 + 43586 0.68 0.523114
Target:  5'- -gGGGCGGCUgacaagUCCGCG-GAUguGCUCg -3'
miRNA:   3'- gaCCCGCCGGa-----GGGCGCaCUG--UGAGa -5'
5830 3' -61.8 NC_001806.1 + 44136 0.66 0.649744
Target:  5'- -gGGGgGGCCU-CCGCGUcaaACUCg -3'
miRNA:   3'- gaCCCgCCGGAgGGCGCAcugUGAGa -5'
5830 3' -61.8 NC_001806.1 + 50888 0.66 0.649744
Target:  5'- uCUGGGCGGaCUCCgCGCGgccgcgGAgCACg-- -3'
miRNA:   3'- -GACCCGCCgGAGG-GCGCa-----CU-GUGaga -5'
5830 3' -61.8 NC_001806.1 + 57031 0.66 0.669403
Target:  5'- aCUGGGUGGCCgggCCCGgGgccggGGCccccgGCUg- -3'
miRNA:   3'- -GACCCGCCGGa--GGGCgCa----CUG-----UGAga -5'
5830 3' -61.8 NC_001806.1 + 65651 0.66 0.659584
Target:  5'- --cGGCGGCCUCCCccuGgGUGGCuGCgCUg -3'
miRNA:   3'- gacCCGCCGGAGGG---CgCACUG-UGaGA- -5'
5830 3' -61.8 NC_001806.1 + 75979 0.66 0.649744
Target:  5'- aCUGGagcGCGGCCUUcggggCCGCGgccGACACg-- -3'
miRNA:   3'- -GACC---CGCCGGAG-----GGCGCa--CUGUGaga -5'
5830 3' -61.8 NC_001806.1 + 77395 0.66 0.679194
Target:  5'- -cGcGGCGGCCgcgCCCGCGccccuGCUCg -3'
miRNA:   3'- gaC-CCGCCGGa--GGGCGCacug-UGAGa -5'
5830 3' -61.8 NC_001806.1 + 78687 0.72 0.329534
Target:  5'- cCUGGGCGcGCCcgUCGuCGUGGCGCUCc -3'
miRNA:   3'- -GACCCGC-CGGagGGC-GCACUGUGAGa -5'
5830 3' -61.8 NC_001806.1 + 78886 0.66 0.639892
Target:  5'- --uGGCGGCacagCUCCCGCGccUGuccGCGCUCa -3'
miRNA:   3'- gacCCGCCG----GAGGGCGC--AC---UGUGAGa -5'
5830 3' -61.8 NC_001806.1 + 86092 0.72 0.336775
Target:  5'- -aGGGCGGCCagCCGCGcGACcguCUCc -3'
miRNA:   3'- gaCCCGCCGGagGGCGCaCUGu--GAGa -5'
5830 3' -61.8 NC_001806.1 + 87293 0.68 0.542166
Target:  5'- cCUGccGGCGGUCUCCCGCGcgcccuccGGCucccGCUCg -3'
miRNA:   3'- -GAC--CCGCCGGAGGGCGCa-------CUG----UGAGa -5'
5830 3' -61.8 NC_001806.1 + 93134 0.67 0.610329
Target:  5'- aUGGGCGGCaaaaaCGCGUGccCGCUCc -3'
miRNA:   3'- gACCCGCCGgagg-GCGCACu-GUGAGa -5'
5830 3' -61.8 NC_001806.1 + 106796 0.67 0.610329
Target:  5'- gUGGGCGGCUaCCCGgaGgagGGCACg-- -3'
miRNA:   3'- gACCCGCCGGaGGGCg-Ca--CUGUGaga -5'
5830 3' -61.8 NC_001806.1 + 119060 0.7 0.41541
Target:  5'- -gGGGCGaGCUgugCCCGCGUGAU--UCUg -3'
miRNA:   3'- gaCCCGC-CGGa--GGGCGCACUGugAGA- -5'
5830 3' -61.8 NC_001806.1 + 131875 0.66 0.679194
Target:  5'- -cGuGGCGGCCgCCCGCGccgcgacGACGC-Cg -3'
miRNA:   3'- gaC-CCGCCGGaGGGCGCa------CUGUGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.