Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5830 | 5' | -53.2 | NC_001806.1 | + | 14825 | 0.68 | 0.946959 |
Target: 5'- cUAGGGUGUgUGCGUcGCCCGcgUCUGGa -3' miRNA: 3'- cAUCUCGCAaGUGCA-UGGGCa-GGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 22383 | 0.71 | 0.846544 |
Target: 5'- cGUGGcGCGggC-CGUGCCCcaCCUGGg -3' miRNA: 3'- -CAUCuCGCaaGuGCAUGGGcaGGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 27061 | 0.66 | 0.979516 |
Target: 5'- cUGGGGCccgaggCcCGUGCCCGggcCCUGGc -3' miRNA: 3'- cAUCUCGcaa---GuGCAUGGGCa--GGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 61548 | 0.66 | 0.974673 |
Target: 5'- -gGGGGC-UUgGCGUGCCCGcCgaGGu -3' miRNA: 3'- caUCUCGcAAgUGCAUGGGCaGgaCC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 65445 | 0.7 | 0.884293 |
Target: 5'- -gGGAGCGggggaugcCGCGgcCCCcggGUCCUGGg -3' miRNA: 3'- caUCUCGCaa------GUGCauGGG---CAGGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 75213 | 0.67 | 0.959019 |
Target: 5'- gGUGGAuGCGgccgUGCGggcgcACCgCGUCCUGGu -3' miRNA: 3'- -CAUCU-CGCaa--GUGCa----UGG-GCAGGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 87881 | 0.69 | 0.910446 |
Target: 5'- ---cGGcCGUUCAugcggcCGUACCCGUCCaGGg -3' miRNA: 3'- caucUC-GCAAGU------GCAUGGGCAGGaCC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 93135 | 0.66 | 0.974673 |
Target: 5'- --uGGGCGgcaaaaaCGCGUGCCCGcUCCUu- -3' miRNA: 3'- cauCUCGCaa-----GUGCAUGGGC-AGGAcc -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 93629 | 0.67 | 0.962581 |
Target: 5'- --cGGGCGUUcCACGgggaugACCCGUUUgGGg -3' miRNA: 3'- cauCUCGCAA-GUGCa-----UGGGCAGGaCC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 113383 | 0.69 | 0.897839 |
Target: 5'- -cGGcGGCGUUC-CGggacGCCCGgggCCUGGa -3' miRNA: 3'- caUC-UCGCAAGuGCa---UGGGCa--GGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 119864 | 0.67 | 0.951212 |
Target: 5'- cGUGGGGCGggCgACGcGCCCGcCCUc- -3' miRNA: 3'- -CAUCUCGCaaG-UGCaUGGGCaGGAcc -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 121405 | 0.69 | 0.904262 |
Target: 5'- -cGGAGcCGggCGCGUgcugcgccuuggGCCCGggggCCUGGu -3' miRNA: 3'- caUCUC-GCaaGUGCA------------UGGGCa---GGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 124813 | 0.66 | 0.969046 |
Target: 5'- gGUGGuuAGCGUgUACGUcgcCCCGagCCUGGg -3' miRNA: 3'- -CAUC--UCGCAaGUGCAu--GGGCa-GGACC- -5' |
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5830 | 5' | -53.2 | NC_001806.1 | + | 132560 | 0.66 | 0.971961 |
Target: 5'- -cGGGGgGgacccgUCcCGUACuuugCCGUCCUGGg -3' miRNA: 3'- caUCUCgCa-----AGuGCAUG----GGCAGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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