miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 5' -55.7 NC_001806.1 + 143118 0.66 0.901072
Target:  5'- -gGGGCGUGGCuGCCgggAGGGGCcgcGGaUGg -3'
miRNA:   3'- ggCCUGUAUCG-CGG---UCCCCGu--UCaAC- -5'
5835 5' -55.7 NC_001806.1 + 28313 0.66 0.901072
Target:  5'- gCCGGGCGccauguuggGGCGCCauguuaGGGGGCGu---- -3'
miRNA:   3'- -GGCCUGUa--------UCGCGG------UCCCCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 5939 0.66 0.901072
Target:  5'- gCGGGCGggacCGCCccaaGGGGGCGGGg-- -3'
miRNA:   3'- gGCCUGUauc-GCGG----UCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 131483 0.66 0.901072
Target:  5'- gCCGGAac--GCaCCgAGGGGcCAAGUUGg -3'
miRNA:   3'- -GGCCUguauCGcGG-UCCCC-GUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 10495 0.66 0.901072
Target:  5'- gUCGGGgGUGGgGUCGgaacuGGGGCcGGUUGc -3'
miRNA:   3'- -GGCCUgUAUCgCGGU-----CCCCGuUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 2583 0.66 0.901072
Target:  5'- -aGGGCcgGuCGCCAGGGGaCGGGg-- -3'
miRNA:   3'- ggCCUGuaUcGCGGUCCCC-GUUCaac -5'
5835 5' -55.7 NC_001806.1 + 48068 0.66 0.894574
Target:  5'- aCGGA---GGaGCCAGGGGCGccGUUGa -3'
miRNA:   3'- gGCCUguaUCgCGGUCCCCGUu-CAAC- -5'
5835 5' -55.7 NC_001806.1 + 4434 0.66 0.894574
Target:  5'- cCCGGGCGggGGCGgcguccgcCCGGGGGCu----- -3'
miRNA:   3'- -GGCCUGUa-UCGC--------GGUCCCCGuucaac -5'
5835 5' -55.7 NC_001806.1 + 42302 0.66 0.894574
Target:  5'- -gGGACGcAGCGCUGacggugucGGGGCGGGggGc -3'
miRNA:   3'- ggCCUGUaUCGCGGU--------CCCCGUUCaaC- -5'
5835 5' -55.7 NC_001806.1 + 62314 0.66 0.894574
Target:  5'- gCGGGCcUGGCGCggaGGGGGUuuGUc- -3'
miRNA:   3'- gGCCUGuAUCGCGg--UCCCCGuuCAac -5'
5835 5' -55.7 NC_001806.1 + 5661 0.66 0.894574
Target:  5'- aUGGGCGgGGCGCgA-GGGCGGGUg- -3'
miRNA:   3'- gGCCUGUaUCGCGgUcCCCGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 2509 0.66 0.894574
Target:  5'- aCGcGGCcugGGCGgCGGGGGCGGGc-- -3'
miRNA:   3'- gGC-CUGua-UCGCgGUCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 147682 0.67 0.887846
Target:  5'- cCCGGGgGccggGGCG-CGGGGGCGGGc-- -3'
miRNA:   3'- -GGCCUgUa---UCGCgGUCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 46069 0.67 0.880891
Target:  5'- cCCGGACGcGGCGUCccguuuccGGGGC-GGUUu -3'
miRNA:   3'- -GGCCUGUaUCGCGGu-------CCCCGuUCAAc -5'
5835 5' -55.7 NC_001806.1 + 2873 0.67 0.873714
Target:  5'- gCGGGCGUccgaGCCGGGGGCGu---- -3'
miRNA:   3'- gGCCUGUAucg-CGGUCCCCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 64966 0.67 0.873714
Target:  5'- cCCGGGCcgGGgGuCCcGGGGCAAa--- -3'
miRNA:   3'- -GGCCUGuaUCgC-GGuCCCCGUUcaac -5'
5835 5' -55.7 NC_001806.1 + 28185 0.67 0.872984
Target:  5'- -gGGGCcgGGCGCCAugucuGGGGCGccauauuGGggGg -3'
miRNA:   3'- ggCCUGuaUCGCGGU-----CCCCGU-------UCaaC- -5'
5835 5' -55.7 NC_001806.1 + 100388 0.67 0.86632
Target:  5'- gCCGGGC--GGCG-CGGGGGCcgGGGUg- -3'
miRNA:   3'- -GGCCUGuaUCGCgGUCCCCG--UUCAac -5'
5835 5' -55.7 NC_001806.1 + 147807 0.67 0.86632
Target:  5'- gCCuGGCAUgGGCGCCgcgGGGGGCcuGUg- -3'
miRNA:   3'- -GGcCUGUA-UCGCGG---UCCCCGuuCAac -5'
5835 5' -55.7 NC_001806.1 + 111331 0.67 0.858713
Target:  5'- aCGGGgGUGGgGCgGGGGGgGGGg-- -3'
miRNA:   3'- gGCCUgUAUCgCGgUCCCCgUUCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.