miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5841 5' -58 NC_001806.1 + 19048 0.66 0.858016
Target:  5'- gCUGcucCGcCUCUgGGCCUGGCGcACCg -3'
miRNA:   3'- gGACau-GCaGGGAgCCGGGCUGC-UGG- -5'
5841 5' -58 NC_001806.1 + 124983 0.67 0.8505
Target:  5'- gCCUGgcguaugACGUCCCagagGGCauCCGGCG-CCa -3'
miRNA:   3'- -GGACa------UGCAGGGag--CCG--GGCUGCuGG- -5'
5841 5' -58 NC_001806.1 + 73085 0.67 0.8505
Target:  5'- gCCUGU-CcUCgCCUCGGCaccccCCGAccCGGCCg -3'
miRNA:   3'- -GGACAuGcAG-GGAGCCG-----GGCU--GCUGG- -5'
5841 5' -58 NC_001806.1 + 79520 0.67 0.839671
Target:  5'- aCCgg-GCGUCCCggccgaaagcacgCGgccggcGCCCGugGGCCc -3'
miRNA:   3'- -GGacaUGCAGGGa------------GC------CGGGCugCUGG- -5'
5841 5' -58 NC_001806.1 + 49350 0.67 0.839671
Target:  5'- gCCga-GCGUCCCggcagcgccccgGGCCCGauGCGGCCc -3'
miRNA:   3'- -GGacaUGCAGGGag----------CCGGGC--UGCUGG- -5'
5841 5' -58 NC_001806.1 + 22868 0.67 0.834924
Target:  5'- aCCUGgcggcCGUCCCggggcuggccggGGCCCGgcccgccagccccccGCGGCCg -3'
miRNA:   3'- -GGACau---GCAGGGag----------CCGGGC---------------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 94918 0.67 0.834924
Target:  5'- gCCUGUACGccaucagcgaauUgCgauucuggCUCGcGUCCGGCGACCg -3'
miRNA:   3'- -GGACAUGC------------AgG--------GAGC-CGGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 23301 0.67 0.834924
Target:  5'- ------aGUCCCggccCGGCCCGGCcGCCc -3'
miRNA:   3'- ggacaugCAGGGa---GCCGGGCUGcUGG- -5'
5841 5' -58 NC_001806.1 + 50181 0.67 0.834127
Target:  5'- gCUGgg-GUCCCUgcuguacUGGCCCGGgGugCg -3'
miRNA:   3'- gGACaugCAGGGA-------GCCGGGCUgCugG- -5'
5841 5' -58 NC_001806.1 + 112004 0.67 0.826876
Target:  5'- cCCUGaACGccgCCUUCaGCCUGGCcACCg -3'
miRNA:   3'- -GGACaUGCa--GGGAGcCGGGCUGcUGG- -5'
5841 5' -58 NC_001806.1 + 23824 0.67 0.826876
Target:  5'- cCCUGcGCG--CCUCgGGCCCGcugcgccgcaugGCGGCCu -3'
miRNA:   3'- -GGACaUGCagGGAG-CCGGGC------------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 21576 0.67 0.818664
Target:  5'- gCCUGUcgccGCG-CCCgcCGGCCCaGCcGCCg -3'
miRNA:   3'- -GGACA----UGCaGGGa-GCCGGGcUGcUGG- -5'
5841 5' -58 NC_001806.1 + 55990 0.67 0.818664
Target:  5'- -gUGUGCGUUCgaugCGGCCUccCGACCa -3'
miRNA:   3'- ggACAUGCAGGga--GCCGGGcuGCUGG- -5'
5841 5' -58 NC_001806.1 + 22160 0.67 0.818664
Target:  5'- gCCgGUuCGaggCCUCGGgcgcCCCGGCGGCCg -3'
miRNA:   3'- -GGaCAuGCag-GGAGCC----GGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 90547 0.67 0.818664
Target:  5'- gCUGUGUGagCgCCUCGGCCUGGacccgGACCg -3'
miRNA:   3'- gGACAUGCa-G-GGAGCCGGGCUg----CUGG- -5'
5841 5' -58 NC_001806.1 + 7875 0.67 0.810295
Target:  5'- cCCUGUGg--CCCU-GGCggaCGGCGGCCa -3'
miRNA:   3'- -GGACAUgcaGGGAgCCGg--GCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 40252 0.67 0.810295
Target:  5'- gCUGUAggaggacccaguCGUCCUUacugaCGGCCCGccggacggauACGGCCu -3'
miRNA:   3'- gGACAU------------GCAGGGA-----GCCGGGC----------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 93189 0.68 0.801776
Target:  5'- uCCUGgccUGUCCC-CGGgCCGgguuugugugcGCGGCCu -3'
miRNA:   3'- -GGACau-GCAGGGaGCCgGGC-----------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 23098 0.68 0.801776
Target:  5'- gCCUGgucgcCGgggCCCUgGGCCCcGCGcuGCCg -3'
miRNA:   3'- -GGACau---GCa--GGGAgCCGGGcUGC--UGG- -5'
5841 5' -58 NC_001806.1 + 70591 0.68 0.793115
Target:  5'- gCUGgucGCGUCCCUCGcgaGCCUG-CGuuCCg -3'
miRNA:   3'- gGACa--UGCAGGGAGC---CGGGCuGCu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.