miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5842 3' -52.7 NC_001806.1 + 46469 0.66 0.983292
Target:  5'- gGCGGCGGUccagcucugggacauGUCGcguCCGCGCaCAGa -3'
miRNA:   3'- -CGCCGCCAu--------------UAGUauuGGUGCGgGUC- -5'
5842 3' -52.7 NC_001806.1 + 94885 0.66 0.983097
Target:  5'- -aGGCGcacgacGUGuuUCAggccACCACGCCCGGc -3'
miRNA:   3'- cgCCGC------CAUu-AGUau--UGGUGCGGGUC- -5'
5842 3' -52.7 NC_001806.1 + 149325 0.66 0.983097
Target:  5'- -aGGgGGgccugcguaugAGUCAgugggGACCACGCCCc- -3'
miRNA:   3'- cgCCgCCa----------UUAGUa----UUGGUGCGGGuc -5'
5842 3' -52.7 NC_001806.1 + 54096 0.66 0.983097
Target:  5'- cGCGGCGGgg-----AGCCGaGCCCGc -3'
miRNA:   3'- -CGCCGCCauuaguaUUGGUgCGGGUc -5'
5842 3' -52.7 NC_001806.1 + 96738 0.66 0.983097
Target:  5'- aCGGUGGUGcaguUCGagcAGCCGCGCCg-- -3'
miRNA:   3'- cGCCGCCAUu---AGUa--UUGGUGCGGguc -5'
5842 3' -52.7 NC_001806.1 + 132177 0.66 0.981054
Target:  5'- cGCGGCuGg---CGUGGgCGCGCCUGGc -3'
miRNA:   3'- -CGCCGcCauuaGUAUUgGUGCGGGUC- -5'
5842 3' -52.7 NC_001806.1 + 80296 0.66 0.981054
Target:  5'- aCGGCaGccg--GUGGCCACGCCCAc -3'
miRNA:   3'- cGCCGcCauuagUAUUGGUGCGGGUc -5'
5842 3' -52.7 NC_001806.1 + 132047 0.66 0.980406
Target:  5'- cUGGUGGUGaaaguugagagagcGUCGUGggGCC-CGCCCGc -3'
miRNA:   3'- cGCCGCCAU--------------UAGUAU--UGGuGCGGGUc -5'
5842 3' -52.7 NC_001806.1 + 93018 0.66 0.978831
Target:  5'- uGCuGCGGcccGUCAUGGCggCGCGCCCc- -3'
miRNA:   3'- -CGcCGCCau-UAGUAUUG--GUGCGGGuc -5'
5842 3' -52.7 NC_001806.1 + 110079 0.66 0.978831
Target:  5'- cGCGGgCGGcGA-CGUAACaCG-GCCCAGa -3'
miRNA:   3'- -CGCC-GCCaUUaGUAUUG-GUgCGGGUC- -5'
5842 3' -52.7 NC_001806.1 + 83669 0.66 0.978831
Target:  5'- aCGGCGGggugcCcgGGCggCAUGCCCAGa -3'
miRNA:   3'- cGCCGCCauua-GuaUUG--GUGCGGGUC- -5'
5842 3' -52.7 NC_001806.1 + 148099 0.66 0.978831
Target:  5'- gGgGGCGcu-GUCcgAGCCGCGgCCGGc -3'
miRNA:   3'- -CgCCGCcauUAGuaUUGGUGCgGGUC- -5'
5842 3' -52.7 NC_001806.1 + 73996 0.66 0.978831
Target:  5'- cGgGGCGGccccgCAgggggcuCCGCGCCCAc -3'
miRNA:   3'- -CgCCGCCauua-GUauu----GGUGCGGGUc -5'
5842 3' -52.7 NC_001806.1 + 5400 0.66 0.978128
Target:  5'- cUGGCGGUcccgcgucgGGUCGUGgauccgugucggcaGCCGCGCuCCGu -3'
miRNA:   3'- cGCCGCCA---------UUAGUAU--------------UGGUGCG-GGUc -5'
5842 3' -52.7 NC_001806.1 + 24681 0.66 0.976421
Target:  5'- -aGGCGGUGcgCGccGGCC-CGgCCCGGu -3'
miRNA:   3'- cgCCGCCAUuaGUa-UUGGuGC-GGGUC- -5'
5842 3' -52.7 NC_001806.1 + 1333 0.66 0.976421
Target:  5'- cGCcGCGGggg-CGUGGCCAaGCCCGc -3'
miRNA:   3'- -CGcCGCCauuaGUAUUGGUgCGGGUc -5'
5842 3' -52.7 NC_001806.1 + 112433 0.66 0.976421
Target:  5'- gGCGGCcggucgacggGGUGcUCGUcACCAcCGCCCc- -3'
miRNA:   3'- -CGCCG----------CCAUuAGUAuUGGU-GCGGGuc -5'
5842 3' -52.7 NC_001806.1 + 136309 0.66 0.976421
Target:  5'- cGCGGUcGUAGUCc--GCCACGCgCGu -3'
miRNA:   3'- -CGCCGcCAUUAGuauUGGUGCGgGUc -5'
5842 3' -52.7 NC_001806.1 + 74760 0.66 0.976421
Target:  5'- cGCGggaGCGGgcGAagGUGGCCcgcgACGCCCGGg -3'
miRNA:   3'- -CGC---CGCCa-UUagUAUUGG----UGCGGGUC- -5'
5842 3' -52.7 NC_001806.1 + 54273 0.66 0.973815
Target:  5'- gGUGGCGGcu-UUAUA---GCGCCCAGc -3'
miRNA:   3'- -CGCCGCCauuAGUAUuggUGCGGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.