miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5849 3' -52.6 NC_001806.1 + 67480 0.66 0.985442
Target:  5'- aGCGUGcUGGccgCCCuccGGGGUCcCGa -3'
miRNA:   3'- -CGCAUaACCa--GGGuuaCCCCAGaGCc -5'
5849 3' -52.6 NC_001806.1 + 39895 0.66 0.984377
Target:  5'- gGUGUcguuGUUGGUgCCGGUGGGG-CuaccgcguaaauacaUCGGu -3'
miRNA:   3'- -CGCA----UAACCAgGGUUACCCCaG---------------AGCC- -5'
5849 3' -52.6 NC_001806.1 + 151071 0.66 0.983635
Target:  5'- cGCGgg--GGUCgCGGgggucgcgGGGGUCgCGGg -3'
miRNA:   3'- -CGCauaaCCAGgGUUa-------CCCCAGaGCC- -5'
5849 3' -52.6 NC_001806.1 + 101771 0.67 0.971961
Target:  5'- gGCGUcgUGGgcguggauaaccUCCCcacaggGGUGGGGUUugugCGGg -3'
miRNA:   3'- -CGCAuaACC------------AGGG------UUACCCCAGa---GCC- -5'
5849 3' -52.6 NC_001806.1 + 4678 0.67 0.968438
Target:  5'- cGCGgcgacaggcGGUCC--GUGGGGUC-CGGa -3'
miRNA:   3'- -CGCauaa-----CCAGGguUACCCCAGaGCC- -5'
5849 3' -52.6 NC_001806.1 + 64956 0.68 0.951212
Target:  5'- gGCGUc--GGcgCCCGGgccgGGGGUCcCGGg -3'
miRNA:   3'- -CGCAuaaCCa-GGGUUa---CCCCAGaGCC- -5'
5849 3' -52.6 NC_001806.1 + 11322 0.69 0.937738
Target:  5'- gGUGUcgUGGggUCCAcgGGGGgcgUCGGa -3'
miRNA:   3'- -CGCAuaACCa-GGGUuaCCCCag-AGCC- -5'
5849 3' -52.6 NC_001806.1 + 24347 0.69 0.932765
Target:  5'- cGCGUGUUcGG-CCCg--GGGGUCUuCGc -3'
miRNA:   3'- -CGCAUAA-CCaGGGuuaCCCCAGA-GCc -5'
5849 3' -52.6 NC_001806.1 + 37340 0.69 0.932765
Target:  5'- cGCGguc--GUCCCGAuaaUGGGGUCcUGGg -3'
miRNA:   3'- -CGCauaacCAGGGUU---ACCCCAGaGCC- -5'
5849 3' -52.6 NC_001806.1 + 133691 0.7 0.904262
Target:  5'- uGCGUGUcuGUCCCGGaggcGGGGagUCGGu -3'
miRNA:   3'- -CGCAUAacCAGGGUUa---CCCCagAGCC- -5'
5849 3' -52.6 NC_001806.1 + 149876 0.71 0.877177
Target:  5'- cGCGgacggagGGUCCCug-GGGGUCgcaacguaggCGGg -3'
miRNA:   3'- -CGCauaa---CCAGGGuuaCCCCAGa---------GCC- -5'
5849 3' -52.6 NC_001806.1 + 34256 0.71 0.869838
Target:  5'- uGCGUGUggcUGGgggCUUAuauGUGGGGUCcCGGg -3'
miRNA:   3'- -CGCAUA---ACCa--GGGU---UACCCCAGaGCC- -5'
5849 3' -52.6 NC_001806.1 + 27640 0.74 0.73774
Target:  5'- cCGcAUUGGUCCCc-UGGGGUUcCGGg -3'
miRNA:   3'- cGCaUAACCAGGGuuACCCCAGaGCC- -5'
5849 3' -52.6 NC_001806.1 + 129096 0.74 0.717864
Target:  5'- uGCGUGacugUGGUCCgcgcgcCAAUGGGGUCg-GGa -3'
miRNA:   3'- -CGCAUa---ACCAGG------GUUACCCCAGagCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.