miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5849 5' -60.2 NC_001806.1 + 130000 0.66 0.705313
Target:  5'- gGACAuGGUGuccguguaCCAGuCCCUGGGACgGGu -3'
miRNA:   3'- -CUGUcUCAC--------GGUC-GGGACCCUGgCUu -5'
5849 5' -60.2 NC_001806.1 + 30398 0.66 0.695364
Target:  5'- cGACGGuGGcGCgCGGCUCgggGGGGCCGGg -3'
miRNA:   3'- -CUGUC-UCaCG-GUCGGGa--CCCUGGCUu -5'
5849 5' -60.2 NC_001806.1 + 54602 0.66 0.694366
Target:  5'- gGGCAGGGUggaccggaccguaGCCAGCCCgGGGuggucGCaCGAc -3'
miRNA:   3'- -CUGUCUCA-------------CGGUCGGGaCCC-----UG-GCUu -5'
5849 5' -60.2 NC_001806.1 + 56929 0.66 0.685363
Target:  5'- -cCAGGGUGCCgacgaacaggGGCCCcGGGGCgaGGAg -3'
miRNA:   3'- cuGUCUCACGG----------UCGGGaCCCUGg-CUU- -5'
5849 5' -60.2 NC_001806.1 + 75249 0.67 0.634878
Target:  5'- cGACGcGGUGaCGGCCCUGGGcgcgGCCGc- -3'
miRNA:   3'- -CUGUcUCACgGUCGGGACCC----UGGCuu -5'
5849 5' -60.2 NC_001806.1 + 19108 0.67 0.634878
Target:  5'- cGACGGGGUGggGGCCC-GGGGCUGc- -3'
miRNA:   3'- -CUGUCUCACggUCGGGaCCCUGGCuu -5'
5849 5' -60.2 NC_001806.1 + 68581 0.68 0.584331
Target:  5'- cGCAccGcGgCGGCCCUGGGGCCGGu -3'
miRNA:   3'- cUGUcuCaCgGUCGGGACCCUGGCUu -5'
5849 5' -60.2 NC_001806.1 + 146834 0.68 0.5643
Target:  5'- aGCAGGGUGCggcggcucCAGCCg-GGGACCGc- -3'
miRNA:   3'- cUGUCUCACG--------GUCGGgaCCCUGGCuu -5'
5849 5' -60.2 NC_001806.1 + 147658 0.68 0.544455
Target:  5'- cGCGGGGcgggcgGCCGGCuCCgccccgGGGGCCGGGg -3'
miRNA:   3'- cUGUCUCa-----CGGUCG-GGa-----CCCUGGCUU- -5'
5849 5' -60.2 NC_001806.1 + 57027 0.69 0.515135
Target:  5'- aGGCAcuGGGUgGCCgGGCCC-GGGGCCGGGg -3'
miRNA:   3'- -CUGU--CUCA-CGG-UCGGGaCCCUGGCUU- -5'
5849 5' -60.2 NC_001806.1 + 66813 0.69 0.505502
Target:  5'- cGGCcGAGcgggGCCGGCCCgGGuGGCCGGu -3'
miRNA:   3'- -CUGuCUCa---CGGUCGGGaCC-CUGGCUu -5'
5849 5' -60.2 NC_001806.1 + 54121 0.69 0.505502
Target:  5'- --gGGGGUGUCccggGGCCCaGGGGCCGGu -3'
miRNA:   3'- cugUCUCACGG----UCGGGaCCCUGGCUu -5'
5849 5' -60.2 NC_001806.1 + 12998 0.7 0.458595
Target:  5'- aGCAGGGUGCUcguguauggGGCCUUGGGcCCGu- -3'
miRNA:   3'- cUGUCUCACGG---------UCGGGACCCuGGCuu -5'
5849 5' -60.2 NC_001806.1 + 30027 0.72 0.348755
Target:  5'- aGCGGAGgcggGgCGGCCgaGGGGCCGGAc -3'
miRNA:   3'- cUGUCUCa---CgGUCGGgaCCCUGGCUU- -5'
5849 5' -60.2 NC_001806.1 + 9983 0.72 0.347218
Target:  5'- uGACGGAGgccgccugccacGCCAGCCCcGGGACgGGc -3'
miRNA:   3'- -CUGUCUCa-----------CGGUCGGGaCCCUGgCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.