miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 3' -61.2 NC_001806.1 + 67370 0.67 0.667973
Target:  5'- cUCUGGgCGUGGUGcGUCGGGccucCCGGa -3'
miRNA:   3'- cGGACCgGCGCCAC-UAGCCCu---GGCUc -5'
5855 3' -61.2 NC_001806.1 + 75691 0.67 0.667973
Target:  5'- -gCUGGCCGCGcGcGAgcgcCGGGcccagcucgagGCCGAGg -3'
miRNA:   3'- cgGACCGGCGC-CaCUa---GCCC-----------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 26490 0.67 0.667973
Target:  5'- cCCUGGCCGUGGUccUCGaGGAggCGGGu -3'
miRNA:   3'- cGGACCGGCGCCAcuAGC-CCUg-GCUC- -5'
5855 3' -61.2 NC_001806.1 + 96767 0.67 0.658217
Target:  5'- gGCCaaugGGUCGCGGcGGUCgcaccacacGGGcCCGGGg -3'
miRNA:   3'- -CGGa---CCGGCGCCaCUAG---------CCCuGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 25394 0.67 0.648442
Target:  5'- cGCCUGgaggacggcGCCGgGGcucUCGGGGCCGcAGg -3'
miRNA:   3'- -CGGAC---------CGGCgCCacuAGCCCUGGC-UC- -5'
5855 3' -61.2 NC_001806.1 + 146340 0.67 0.627885
Target:  5'- cGCCcccccauUGGCCgGCGGg---CGGGACCGc- -3'
miRNA:   3'- -CGG-------ACCGG-CGCCacuaGCCCUGGCuc -5'
5855 3' -61.2 NC_001806.1 + 66242 0.67 0.619075
Target:  5'- cGCUUGGCCGgGGaGggCaGGGCCGcGGg -3'
miRNA:   3'- -CGGACCGGCgCCaCuaGcCCUGGC-UC- -5'
5855 3' -61.2 NC_001806.1 + 20880 0.67 0.615161
Target:  5'- gGCCUGGCCcaugaugcaggggGCGGUGaacuuuagcacccuAuaagucUCGGGACCGc- -3'
miRNA:   3'- -CGGACCGG-------------CGCCAC--------------U------AGCCCUGGCuc -5'
5855 3' -61.2 NC_001806.1 + 117833 0.68 0.609294
Target:  5'- gGCCgGGCCG-GGUGggCGGGGuuuggaaaaaCGAGg -3'
miRNA:   3'- -CGGaCCGGCgCCACuaGCCCUg---------GCUC- -5'
5855 3' -61.2 NC_001806.1 + 127965 0.68 0.609294
Target:  5'- uGCgCUGGCCgGCGGcg--CGGGACCu-- -3'
miRNA:   3'- -CG-GACCGG-CGCCacuaGCCCUGGcuc -5'
5855 3' -61.2 NC_001806.1 + 40016 0.68 0.59953
Target:  5'- cGCCUGGCCaccagGGUGGccCGGGcgacccuggucGCCGAGc -3'
miRNA:   3'- -CGGACCGGcg---CCACUa-GCCC-----------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 131906 0.68 0.59758
Target:  5'- gGCCcuugGGCCGCccgccgucccguuGGUcccggcguccggcGggCGGGACCGGGg -3'
miRNA:   3'- -CGGa---CCGGCG-------------CCA-------------CuaGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 19637 0.68 0.593681
Target:  5'- gGCCacGGCCGagucggcacgggaccUGGUGcgCGGGGCCGcGg -3'
miRNA:   3'- -CGGa-CCGGC---------------GCCACuaGCCCUGGCuC- -5'
5855 3' -61.2 NC_001806.1 + 108541 0.68 0.589787
Target:  5'- aCCcGGUCGgGGggGAUUGGGgugACCGAGg -3'
miRNA:   3'- cGGaCCGGCgCCa-CUAGCCC---UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 96484 0.68 0.570393
Target:  5'- aCCgcucCCGCGGUGAUCGuGGGCCcggugGAGg -3'
miRNA:   3'- cGGacc-GGCGCCACUAGC-CCUGG-----CUC- -5'
5855 3' -61.2 NC_001806.1 + 133164 0.68 0.570393
Target:  5'- gGCUuggGGCCGaCGG-GGUgGGGGcCCGGGg -3'
miRNA:   3'- -CGGa--CCGGC-GCCaCUAgCCCU-GGCUC- -5'
5855 3' -61.2 NC_001806.1 + 9134 0.68 0.560753
Target:  5'- uGCCgggaggGGCCGCGGaUGggCGGG-CCu-- -3'
miRNA:   3'- -CGGa-----CCGGCGCC-ACuaGCCCuGGcuc -5'
5855 3' -61.2 NC_001806.1 + 6591 0.68 0.560753
Target:  5'- cUCUGGCaCGCGGgggugggaagGGUCGGGGgaGGGg -3'
miRNA:   3'- cGGACCG-GCGCCa---------CUAGCCCUggCUC- -5'
5855 3' -61.2 NC_001806.1 + 127567 0.68 0.560753
Target:  5'- gGCCcGGCC-CGGUGGcgCGGGccGCgGAGg -3'
miRNA:   3'- -CGGaCCGGcGCCACUa-GCCC--UGgCUC- -5'
5855 3' -61.2 NC_001806.1 + 117863 0.68 0.560753
Target:  5'- ---gGGCgGCGGUGGcCGGG-CCGGGc -3'
miRNA:   3'- cggaCCGgCGCCACUaGCCCuGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.