miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 24236 0.66 0.931571
Target:  5'- uGCuCGCAGgccagGCCGacgaUGcCCGUGGCGGCc -3'
miRNA:   3'- -CG-GUGUCa----UGGCg---AU-GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 92236 0.66 0.931571
Target:  5'- aGCCGCGcUGCCGUccGCCGCGcccuCGAa- -3'
miRNA:   3'- -CGGUGUcAUGGCGa-UGGCGCu---GCUgu -5'
5855 5' -55.5 NC_001806.1 + 127627 0.66 0.931571
Target:  5'- gGCCugGGcgcGCCGCUGcggcCCGUGuACGugGc -3'
miRNA:   3'- -CGGugUCa--UGGCGAU----GGCGC-UGCugU- -5'
5855 5' -55.5 NC_001806.1 + 148385 0.66 0.928475
Target:  5'- cGCCACgcugccggugaugaaGGaGCUGCUGuuGCGcGCGGCGc -3'
miRNA:   3'- -CGGUG---------------UCaUGGCGAUggCGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 64609 0.66 0.926364
Target:  5'- cCCGC-GUugCGCggGCC-CGGCGGCGu -3'
miRNA:   3'- cGGUGuCAugGCGa-UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 129594 0.66 0.926364
Target:  5'- cGCCGCGGggauccucGCCGCc-CUGgGGCGGCu -3'
miRNA:   3'- -CGGUGUCa-------UGGCGauGGCgCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 81860 0.67 0.903167
Target:  5'- cGCCAUcGUGCUGCUGCgGCuGC-ACAu -3'
miRNA:   3'- -CGGUGuCAUGGCGAUGgCGcUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 87029 0.67 0.903167
Target:  5'- aCCGCAGaGCgGC-GCCGUGugucGCGACAg -3'
miRNA:   3'- cGGUGUCaUGgCGaUGGCGC----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 84259 0.67 0.899365
Target:  5'- gGCCGCGGgggaucgauaauucGCCGCUcCCuacaGCGcACGACAg -3'
miRNA:   3'- -CGGUGUCa-------------UGGCGAuGG----CGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 56791 0.67 0.896783
Target:  5'- cGCCACGcaagcgGCCGCggacgUGCgggaGCGACGGCGg -3'
miRNA:   3'- -CGGUGUca----UGGCG-----AUGg---CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127766 0.67 0.896783
Target:  5'- cCCGCgcgAGUACCGCcggGCCGUGcugcCGGCGc -3'
miRNA:   3'- cGGUG---UCAUGGCGa--UGGCGCu---GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 70933 0.67 0.896783
Target:  5'- cGCCGCAGgccaaaCGCggGCCGCaaccaGGCGGCc -3'
miRNA:   3'- -CGGUGUCaug---GCGa-UGGCG-----CUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 73638 0.67 0.903167
Target:  5'- cGCCACcc-ACCGCacccCCGCGGCGcGCGu -3'
miRNA:   3'- -CGGUGucaUGGCGau--GGCGCUGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 4231 0.67 0.903167
Target:  5'- cGCCGCc--GCCGCUGCUGUugGugGugGu -3'
miRNA:   3'- -CGGUGucaUGGCGAUGGCG--CugCugU- -5'
5855 5' -55.5 NC_001806.1 + 100680 0.67 0.905656
Target:  5'- cGCCACccaggcgcugggcgaGGUGgaGCUGCC-CGGCGGCc -3'
miRNA:   3'- -CGGUG---------------UCAUggCGAUGGcGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 87384 0.67 0.90932
Target:  5'- gGCCACGGcgggaucgGCCGCaagACCaGCGcCGGCc -3'
miRNA:   3'- -CGGUGUCa-------UGGCGa--UGG-CGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 83693 0.67 0.90932
Target:  5'- uCCGCcGgcCUGCgcACCGCGGCGGCc -3'
miRNA:   3'- cGGUGuCauGGCGa-UGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 150666 0.67 0.90932
Target:  5'- cGCCAC-GUACaCGg-GCCGCaGCGGCGc -3'
miRNA:   3'- -CGGUGuCAUG-GCgaUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 109080 0.67 0.90932
Target:  5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3'
miRNA:   3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 76556 0.67 0.896783
Target:  5'- aGCCACG--AgCGCUggGCCGCcGACGugGa -3'
miRNA:   3'- -CGGUGUcaUgGCGA--UGGCG-CUGCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.