Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 148244 | 0.69 | 0.812497 |
Target: 5'- aGCCGCGugaucagggcGUACUGCUG-CGCGGCGuCGc -3' miRNA: 3'- -CGGUGU----------CAUGGCGAUgGCGCUGCuGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 38365 | 0.69 | 0.794777 |
Target: 5'- gGCCACGaccCCGUguaCGCGGCGGCAu -3' miRNA: 3'- -CGGUGUcauGGCGaugGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 152258 | 0.69 | 0.793875 |
Target: 5'- cGCCGCc--ACCGCUuuaaaggGCCGCGcGCGACc -3' miRNA: 3'- -CGGUGucaUGGCGA-------UGGCGC-UGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 74891 | 0.69 | 0.829566 |
Target: 5'- gGCCACAGgccagacgGgCGCgGgCGCGGCGGCc -3' miRNA: 3'- -CGGUGUCa-------UgGCGaUgGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 548 | 0.69 | 0.793875 |
Target: 5'- cGCCGCc--ACCGCUuuaaaggGCCGCGcGCGACc -3' miRNA: 3'- -CGGUGucaUGGCGA-------UGGCGC-UGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 129108 | 0.69 | 0.794777 |
Target: 5'- uCCGCGGccGCCGCcGCCGCGGaccugcuguuUGACAa -3' miRNA: 3'- cGGUGUCa-UGGCGaUGGCGCU----------GCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 99278 | 0.69 | 0.803714 |
Target: 5'- aGCCAC-GUAuCUGacgGCCGaCGACGACGa -3' miRNA: 3'- -CGGUGuCAU-GGCga-UGGC-GCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 107815 | 0.69 | 0.812497 |
Target: 5'- gGCCGCGGgcCCGgcguCCGCGugGAgCAu -3' miRNA: 3'- -CGGUGUCauGGCgau-GGCGCugCU-GU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 147933 | 0.69 | 0.821117 |
Target: 5'- gGCCACc--GCCGCgcggGCC-CGGCGGCGc -3' miRNA: 3'- -CGGUGucaUGGCGa---UGGcGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 55781 | 0.69 | 0.821117 |
Target: 5'- cGCCugGGgucgcgGCCGCgACCcagGCGGCGAa- -3' miRNA: 3'- -CGGugUCa-----UGGCGaUGG---CGCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 19874 | 0.68 | 0.845923 |
Target: 5'- aGUCACggcacgGGUGCUGCUGCCccGCGAuuaCGACu -3' miRNA: 3'- -CGGUG------UCAUGGCGAUGG--CGCU---GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 26419 | 0.68 | 0.845923 |
Target: 5'- cGCCGCGGgcccccggccGCCGCggacGCCGUGGCGcCc -3' miRNA: 3'- -CGGUGUCa---------UGGCGa---UGGCGCUGCuGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 129648 | 0.68 | 0.845923 |
Target: 5'- cGCCGCcGUcGCCGCcGCCGCaccgGGCGAg- -3' miRNA: 3'- -CGGUGuCA-UGGCGaUGGCG----CUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 129512 | 0.68 | 0.853815 |
Target: 5'- cGCCAC---GCCGacGCCGaCGACGACGc -3' miRNA: 3'- -CGGUGucaUGGCgaUGGC-GCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 58280 | 0.68 | 0.853815 |
Target: 5'- gGCCGCGGUACagaucgGC-GCCGCGAgaUGGCc -3' miRNA: 3'- -CGGUGUCAUGg-----CGaUGGCGCU--GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 127562 | 0.68 | 0.861508 |
Target: 5'- gGCC-CGGUGgCGCggGCCGCGGaggGACu -3' miRNA: 3'- -CGGuGUCAUgGCGa-UGGCGCUg--CUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 49788 | 0.68 | 0.861508 |
Target: 5'- cGUCGCGGUAgCGgUACUGUGGcCGGCc -3' miRNA: 3'- -CGGUGUCAUgGCgAUGGCGCU-GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 116718 | 0.68 | 0.868257 |
Target: 5'- cGCC-CAGcgaGCCGCUcggcgcgcccggcGCCGCGccgaACGACGu -3' miRNA: 3'- -CGGuGUCa--UGGCGA-------------UGGCGC----UGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 991 | 0.68 | 0.868996 |
Target: 5'- cGCCggGCGGUggggGCCGggGCCgggggGCGGCGGCGg -3' miRNA: 3'- -CGG--UGUCA----UGGCgaUGG-----CGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100966 | 0.68 | 0.837837 |
Target: 5'- uGgCGCGGUGCCugacgccuGCcaaccugauCCGCGGCGACAa -3' miRNA: 3'- -CgGUGUCAUGG--------CGau-------GGCGCUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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