miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 149173 0.67 0.89017
Target:  5'- uCCGCGGcgGCgGCgGCCGCGGagcuCGGCAg -3'
miRNA:   3'- cGGUGUCa-UGgCGaUGGCGCU----GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 139489 0.67 0.89017
Target:  5'- uGCCAgGagacUGCCGCccACCGCGcCGGCGa -3'
miRNA:   3'- -CGGUgUc---AUGGCGa-UGGCGCuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77600 0.67 0.89017
Target:  5'- gGCCAUGGaUGCCGCcaa-GCuGACGGCAg -3'
miRNA:   3'- -CGGUGUC-AUGGCGauggCG-CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77091 0.67 0.89017
Target:  5'- cGCCgGCAGcGCCGCcgUCGCaACGGCAg -3'
miRNA:   3'- -CGG-UGUCaUGGCGauGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 107766 0.67 0.896783
Target:  5'- aCCGUGGUGCCGuUUGCCGgGACGGu- -3'
miRNA:   3'- cGGUGUCAUGGC-GAUGGCgCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 99230 0.67 0.896783
Target:  5'- aGCCACccacGCCGCcucggcCCGCGaACGGCAc -3'
miRNA:   3'- -CGGUGuca-UGGCGau----GGCGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 76556 0.67 0.896783
Target:  5'- aGCCACG--AgCGCUggGCCGCcGACGugGa -3'
miRNA:   3'- -CGGUGUcaUgGCGA--UGGCG-CUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 82390 0.66 0.926364
Target:  5'- aGCCACGcccccucuGUccACCug-GCCGCGGCGACc -3'
miRNA:   3'- -CGGUGU--------CA--UGGcgaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 129594 0.66 0.926364
Target:  5'- cGCCGCGGggauccucGCCGCc-CUGgGGCGGCu -3'
miRNA:   3'- -CGGUGUCa-------UGGCGauGGCgCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 64609 0.66 0.926364
Target:  5'- cCCGC-GUugCGCggGCC-CGGCGGCGu -3'
miRNA:   3'- cGGUGuCAugGCGa-UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 24236 0.66 0.931571
Target:  5'- uGCuCGCAGgccagGCCGacgaUGcCCGUGGCGGCc -3'
miRNA:   3'- -CG-GUGUCa----UGGCg---AU-GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 89093 0.66 0.936541
Target:  5'- aCCGCAGguugUCGUUGCCGCGGguGCAc -3'
miRNA:   3'- cGGUGUCau--GGCGAUGGCGCUgcUGU- -5'
5855 5' -55.5 NC_001806.1 + 99396 0.66 0.926364
Target:  5'- cCCgACAGgcgACCGC--CgGCGGCGACGu -3'
miRNA:   3'- cGG-UGUCa--UGGCGauGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 38183 0.66 0.915237
Target:  5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3'
miRNA:   3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5'
5855 5' -55.5 NC_001806.1 + 86925 0.66 0.915237
Target:  5'- cGUCugGGUACCGgUagacguccccGCCgaGCGACGugGg -3'
miRNA:   3'- -CGGugUCAUGGCgA----------UGG--CGCUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 100461 0.66 0.915237
Target:  5'- gGCCA-AGUacGCCGCcACCGUGGcCGGCc -3'
miRNA:   3'- -CGGUgUCA--UGGCGaUGGCGCU-GCUGu -5'
5855 5' -55.5 NC_001806.1 + 128301 0.66 0.915237
Target:  5'- cGCCGgAGUGguCCGCcgAgCGCGGCGGg- -3'
miRNA:   3'- -CGGUgUCAU--GGCGa-UgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 146667 0.66 0.915237
Target:  5'- cGCCGgGGgcCCGUgGCCGCGGCc--- -3'
miRNA:   3'- -CGGUgUCauGGCGaUGGCGCUGcugu -5'
5855 5' -55.5 NC_001806.1 + 66520 0.66 0.926364
Target:  5'- cCUGCGGU-CCGgaGCCGCG-CGGCc -3'
miRNA:   3'- cGGUGUCAuGGCgaUGGCGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 117731 0.66 0.914656
Target:  5'- -gCGCGGgccggGCCGCUcguaagaGCCGCGAccCGGCc -3'
miRNA:   3'- cgGUGUCa----UGGCGA-------UGGCGCU--GCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.