miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 129108 0.69 0.794777
Target:  5'- uCCGCGGccGCCGCcGCCGCGGaccugcuguuUGACAa -3'
miRNA:   3'- cGGUGUCa-UGGCGaUGGCGCU----------GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 38365 0.69 0.794777
Target:  5'- gGCCACGaccCCGUguaCGCGGCGGCAu -3'
miRNA:   3'- -CGGUGUcauGGCGaugGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 111681 0.69 0.794777
Target:  5'- cGCCGCGGguCgGCgugCGCGGCGACAa -3'
miRNA:   3'- -CGGUGUCauGgCGaugGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 99278 0.69 0.803714
Target:  5'- aGCCAC-GUAuCUGacgGCCGaCGACGACGa -3'
miRNA:   3'- -CGGUGuCAU-GGCga-UGGC-GCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 148244 0.69 0.812497
Target:  5'- aGCCGCGugaucagggcGUACUGCUG-CGCGGCGuCGc -3'
miRNA:   3'- -CGGUGU----------CAUGGCGAUgGCGCUGCuGU- -5'
5855 5' -55.5 NC_001806.1 + 107815 0.69 0.812497
Target:  5'- gGCCGCGGgcCCGgcguCCGCGugGAgCAu -3'
miRNA:   3'- -CGGUGUCauGGCgau-GGCGCugCU-GU- -5'
5855 5' -55.5 NC_001806.1 + 147933 0.69 0.821117
Target:  5'- gGCCACc--GCCGCgcggGCC-CGGCGGCGc -3'
miRNA:   3'- -CGGUGucaUGGCGa---UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 55781 0.69 0.821117
Target:  5'- cGCCugGGgucgcgGCCGCgACCcagGCGGCGAa- -3'
miRNA:   3'- -CGGugUCa-----UGGCGaUGG---CGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 74891 0.69 0.829566
Target:  5'- gGCCACAGgccagacgGgCGCgGgCGCGGCGGCc -3'
miRNA:   3'- -CGGUGUCa-------UgGCGaUgGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 109645 0.69 0.829566
Target:  5'- cGCCcugauCA-UACUGC-GCCGCGGCGGCGu -3'
miRNA:   3'- -CGGu----GUcAUGGCGaUGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 100966 0.68 0.837837
Target:  5'- uGgCGCGGUGCCugacgccuGCcaaccugauCCGCGGCGACAa -3'
miRNA:   3'- -CgGUGUCAUGG--------CGau-------GGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 147605 0.68 0.837837
Target:  5'- cGCgGCGGcuggGCCgGCgGgCGCGGCGACAg -3'
miRNA:   3'- -CGgUGUCa---UGG-CGaUgGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 19874 0.68 0.845923
Target:  5'- aGUCACggcacgGGUGCUGCUGCCccGCGAuuaCGACu -3'
miRNA:   3'- -CGGUG------UCAUGGCGAUGG--CGCU---GCUGu -5'
5855 5' -55.5 NC_001806.1 + 95427 0.68 0.845923
Target:  5'- cGCCaACAccGCCGCggccagggcgGCCGCGGCGGg- -3'
miRNA:   3'- -CGG-UGUcaUGGCGa---------UGGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 26419 0.68 0.845923
Target:  5'- cGCCGCGGgcccccggccGCCGCggacGCCGUGGCGcCc -3'
miRNA:   3'- -CGGUGUCa---------UGGCGa---UGGCGCUGCuGu -5'
5855 5' -55.5 NC_001806.1 + 129648 0.68 0.845923
Target:  5'- cGCCGCcGUcGCCGCcGCCGCaccgGGCGAg- -3'
miRNA:   3'- -CGGUGuCA-UGGCGaUGGCG----CUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 58280 0.68 0.853815
Target:  5'- gGCCGCGGUACagaucgGC-GCCGCGAgaUGGCc -3'
miRNA:   3'- -CGGUGUCAUGg-----CGaUGGCGCU--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 129512 0.68 0.853815
Target:  5'- cGCCAC---GCCGacGCCGaCGACGACGc -3'
miRNA:   3'- -CGGUGucaUGGCgaUGGC-GCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127562 0.68 0.861508
Target:  5'- gGCC-CGGUGgCGCggGCCGCGGaggGACu -3'
miRNA:   3'- -CGGuGUCAUgGCGa-UGGCGCUg--CUGu -5'
5855 5' -55.5 NC_001806.1 + 49788 0.68 0.861508
Target:  5'- cGUCGCGGUAgCGgUACUGUGGcCGGCc -3'
miRNA:   3'- -CGGUGUCAUgGCgAUGGCGCU-GCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.