miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 116718 0.68 0.868257
Target:  5'- cGCC-CAGcgaGCCGCUcggcgcgcccggcGCCGCGccgaACGACGu -3'
miRNA:   3'- -CGGuGUCa--UGGCGA-------------UGGCGC----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 991 0.68 0.868996
Target:  5'- cGCCggGCGGUggggGCCGggGCCgggggGCGGCGGCGg -3'
miRNA:   3'- -CGG--UGUCA----UGGCgaUGG-----CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 31921 0.67 0.876272
Target:  5'- gGCgGCGGgucgucCCGCU-CgGCGACGACc -3'
miRNA:   3'- -CGgUGUCau----GGCGAuGgCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 128805 0.67 0.876272
Target:  5'- cCCGCGGcGCCccggGCcGCCGCGGCG-CAg -3'
miRNA:   3'- cGGUGUCaUGG----CGaUGGCGCUGCuGU- -5'
5855 5' -55.5 NC_001806.1 + 55528 0.67 0.879122
Target:  5'- cGCCACGGUggugcaguucgagcaGCCGC-GCCGCugccCGACc -3'
miRNA:   3'- -CGGUGUCA---------------UGGCGaUGGCGcu--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 149264 0.67 0.883332
Target:  5'- gGCgGCGGcgGCCGCcAgCGCGuCGGCGg -3'
miRNA:   3'- -CGgUGUCa-UGGCGaUgGCGCuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77091 0.67 0.89017
Target:  5'- cGCCgGCAGcGCCGCcgUCGCaACGGCAg -3'
miRNA:   3'- -CGG-UGUCaUGGCGauGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77600 0.67 0.89017
Target:  5'- gGCCAUGGaUGCCGCcaa-GCuGACGGCAg -3'
miRNA:   3'- -CGGUGUC-AUGGCGauggCG-CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 139489 0.67 0.89017
Target:  5'- uGCCAgGagacUGCCGCccACCGCGcCGGCGa -3'
miRNA:   3'- -CGGUgUc---AUGGCGa-UGGCGCuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 149173 0.67 0.89017
Target:  5'- uCCGCGGcgGCgGCgGCCGCGGagcuCGGCAg -3'
miRNA:   3'- cGGUGUCa-UGgCGaUGGCGCU----GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 107766 0.67 0.896783
Target:  5'- aCCGUGGUGCCGuUUGCCGgGACGGu- -3'
miRNA:   3'- cGGUGUCAUGGC-GAUGGCgCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 56791 0.67 0.896783
Target:  5'- cGCCACGcaagcgGCCGCggacgUGCgggaGCGACGGCGg -3'
miRNA:   3'- -CGGUGUca----UGGCG-----AUGg---CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127766 0.67 0.896783
Target:  5'- cCCGCgcgAGUACCGCcggGCCGUGcugcCGGCGc -3'
miRNA:   3'- cGGUG---UCAUGGCGa--UGGCGCu---GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 70933 0.67 0.896783
Target:  5'- cGCCGCAGgccaaaCGCggGCCGCaaccaGGCGGCc -3'
miRNA:   3'- -CGGUGUCaug---GCGa-UGGCG-----CUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 99230 0.67 0.896783
Target:  5'- aGCCACccacGCCGCcucggcCCGCGaACGGCAc -3'
miRNA:   3'- -CGGUGuca-UGGCGau----GGCGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 76556 0.67 0.896783
Target:  5'- aGCCACG--AgCGCUggGCCGCcGACGugGa -3'
miRNA:   3'- -CGGUGUcaUgGCGA--UGGCG-CUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 84259 0.67 0.899365
Target:  5'- gGCCGCGGgggaucgauaauucGCCGCUcCCuacaGCGcACGACAg -3'
miRNA:   3'- -CGGUGUCa-------------UGGCGAuGG----CGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 87029 0.67 0.903167
Target:  5'- aCCGCAGaGCgGC-GCCGUGugucGCGACAg -3'
miRNA:   3'- cGGUGUCaUGgCGaUGGCGC----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 81860 0.67 0.903167
Target:  5'- cGCCAUcGUGCUGCUGCgGCuGC-ACAu -3'
miRNA:   3'- -CGGUGuCAUGGCGAUGgCGcUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 73638 0.67 0.903167
Target:  5'- cGCCACcc-ACCGCacccCCGCGGCGcGCGu -3'
miRNA:   3'- -CGGUGucaUGGCGau--GGCGCUGC-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.