Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 4231 | 0.67 | 0.903167 |
Target: 5'- cGCCGCc--GCCGCUGCUGUugGugGugGu -3' miRNA: 3'- -CGGUGucaUGGCGAUGGCG--CugCugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100680 | 0.67 | 0.905656 |
Target: 5'- cGCCACccaggcgcugggcgaGGUGgaGCUGCC-CGGCGGCc -3' miRNA: 3'- -CGGUG---------------UCAUggCGAUGGcGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 87384 | 0.67 | 0.90932 |
Target: 5'- gGCCACGGcgggaucgGCCGCaagACCaGCGcCGGCc -3' miRNA: 3'- -CGGUGUCa-------UGGCGa--UGG-CGCuGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 83693 | 0.67 | 0.90932 |
Target: 5'- uCCGCcGgcCUGCgcACCGCGGCGGCc -3' miRNA: 3'- cGGUGuCauGGCGa-UGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 150666 | 0.67 | 0.90932 |
Target: 5'- cGCCAC-GUACaCGg-GCCGCaGCGGCGc -3' miRNA: 3'- -CGGUGuCAUG-GCgaUGGCGcUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 109080 | 0.67 | 0.90932 |
Target: 5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3' miRNA: 3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 57220 | 0.67 | 0.90932 |
Target: 5'- cGCCGCGGUgGCCGUggaacuggcGCUGUucgGGCGGCGg -3' miRNA: 3'- -CGGUGUCA-UGGCGa--------UGGCG---CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 117731 | 0.66 | 0.914656 |
Target: 5'- -gCGCGGgccggGCCGCUcguaagaGCCGCGAccCGGCc -3' miRNA: 3'- cgGUGUCa----UGGCGA-------UGGCGCU--GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 85252 | 0.66 | 0.915237 |
Target: 5'- cCCGC-GUcCCGCgguaguugGCCGUGACGugGg -3' miRNA: 3'- cGGUGuCAuGGCGa-------UGGCGCUGCugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 38183 | 0.66 | 0.915237 |
Target: 5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3' miRNA: 3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 86925 | 0.66 | 0.915237 |
Target: 5'- cGUCugGGUACCGgUagacguccccGCCgaGCGACGugGg -3' miRNA: 3'- -CGGugUCAUGGCgA----------UGG--CGCUGCugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100461 | 0.66 | 0.915237 |
Target: 5'- gGCCA-AGUacGCCGCcACCGUGGcCGGCc -3' miRNA: 3'- -CGGUgUCA--UGGCGaUGGCGCU-GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 128301 | 0.66 | 0.915237 |
Target: 5'- cGCCGgAGUGguCCGCcgAgCGCGGCGGg- -3' miRNA: 3'- -CGGUgUCAU--GGCGa-UgGCGCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 146667 | 0.66 | 0.915237 |
Target: 5'- cGCCGgGGgcCCGUgGCCGCGGCc--- -3' miRNA: 3'- -CGGUgUCauGGCGaUGGCGCUGcugu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 77779 | 0.66 | 0.920919 |
Target: 5'- cGCCGCAGcucgggucugGCCgaGCUGCgGCGcuuCGACGc -3' miRNA: 3'- -CGGUGUCa---------UGG--CGAUGgCGCu--GCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 97896 | 0.66 | 0.920919 |
Target: 5'- cGCCGauga--CGCUGCCGCGACuGugAu -3' miRNA: 3'- -CGGUgucaugGCGAUGGCGCUG-CugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 33071 | 0.66 | 0.920919 |
Target: 5'- cGCCGCcGccCCGCcgGCCGCGAaggaGGCu -3' miRNA: 3'- -CGGUGuCauGGCGa-UGGCGCUg---CUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 70317 | 0.66 | 0.920919 |
Target: 5'- cGCCuccCGGgACCGCcggguuCgGCGGCGACGg -3' miRNA: 3'- -CGGu--GUCaUGGCGau----GgCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 66520 | 0.66 | 0.926364 |
Target: 5'- cCUGCGGU-CCGgaGCCGCG-CGGCc -3' miRNA: 3'- cGGUGUCAuGGCgaUGGCGCuGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 99396 | 0.66 | 0.926364 |
Target: 5'- cCCgACAGgcgACCGC--CgGCGGCGACGu -3' miRNA: 3'- cGG-UGUCa--UGGCGauGgCGCUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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