miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 118502 0.7 0.738402
Target:  5'- gGCgGCGGcUGCgGCgGCUGCGGCGGCc -3'
miRNA:   3'- -CGgUGUC-AUGgCGaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 18853 0.7 0.728631
Target:  5'- uCCGCGGgcCCGCguacACCaCGGCGGCAg -3'
miRNA:   3'- cGGUGUCauGGCGa---UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150870 0.7 0.728631
Target:  5'- cGCCagcACGGUGCCGCUGcggcCCGUGGcCGAg- -3'
miRNA:   3'- -CGG---UGUCAUGGCGAU----GGCGCU-GCUgu -5'
5855 5' -55.5 NC_001806.1 + 147372 0.7 0.728631
Target:  5'- gGCCAgCAGaGCCaGCUGUCGCGGCGAg- -3'
miRNA:   3'- -CGGU-GUCaUGG-CGAUGGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 130351 0.71 0.714815
Target:  5'- cGCCGcCGGgcCCGCgcggcgguggccgGCCGCGACGcCAc -3'
miRNA:   3'- -CGGU-GUCauGGCGa------------UGGCGCUGCuGU- -5'
5855 5' -55.5 NC_001806.1 + 26161 0.71 0.698859
Target:  5'- aGCCuGCuGUuUCGCUACUGCGugGGCc -3'
miRNA:   3'- -CGG-UGuCAuGGCGAUGGCGCugCUGu -5'
5855 5' -55.5 NC_001806.1 + 15567 0.71 0.698859
Target:  5'- gGCUGCAG-ACCGCggGCCGCcACGugGc -3'
miRNA:   3'- -CGGUGUCaUGGCGa-UGGCGcUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 149078 0.71 0.688811
Target:  5'- gGCCACGGcgGCCucGCUGCCGcCGGCcACGc -3'
miRNA:   3'- -CGGUGUCa-UGG--CGAUGGC-GCUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 31061 0.72 0.668585
Target:  5'- aCCGCgAGcGCCGCUACUGCG-CGAUc -3'
miRNA:   3'- cGGUG-UCaUGGCGAUGGCGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 68183 0.72 0.668585
Target:  5'- gGCCcCAGcUGCgCGCUGCCGCGGaGGCc -3'
miRNA:   3'- -CGGuGUC-AUG-GCGAUGGCGCUgCUGu -5'
5855 5' -55.5 NC_001806.1 + 48473 0.72 0.658424
Target:  5'- uGCUGCAGacccccggGCgGCgccGCCGCGGCGGCGa -3'
miRNA:   3'- -CGGUGUCa-------UGgCGa--UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 34317 0.72 0.648241
Target:  5'- cGUCGCGGUACCGCc----CGACGACAg -3'
miRNA:   3'- -CGGUGUCAUGGCGauggcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 36743 0.72 0.648241
Target:  5'- uCCACGGccACCGCcGCCaGCGACGuACAg -3'
miRNA:   3'- cGGUGUCa-UGGCGaUGG-CGCUGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 93877 0.72 0.638046
Target:  5'- aCCugGGUGCUGgUGCUG-GACGACAc -3'
miRNA:   3'- cGGugUCAUGGCgAUGGCgCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 61277 0.72 0.638046
Target:  5'- aGCCAgGGUAagaccCCGCggggcgGgCGCGACGGCGg -3'
miRNA:   3'- -CGGUgUCAU-----GGCGa-----UgGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150455 0.72 0.638046
Target:  5'- cGCaCGCGGUAgCGCacguUGCCGCcGCGGCAc -3'
miRNA:   3'- -CG-GUGUCAUgGCG----AUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 17595 0.72 0.638046
Target:  5'- gGCCGuCAGgACCGCcACCGCGaagccGCGAUAa -3'
miRNA:   3'- -CGGU-GUCaUGGCGaUGGCGC-----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 4264 0.72 0.627846
Target:  5'- cCCGCGGcGCCGCgGCuCGCGACuGGCGg -3'
miRNA:   3'- cGGUGUCaUGGCGaUG-GCGCUG-CUGU- -5'
5855 5' -55.5 NC_001806.1 + 40361 0.72 0.626826
Target:  5'- cGCgUACAGUucgagguccaccaGCCGCUGauugcCCGCGACGGCc -3'
miRNA:   3'- -CG-GUGUCA-------------UGGCGAU-----GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 127418 0.72 0.617649
Target:  5'- gGCCACGG-GCCGCagcggcaccgUGCUGgCGGCGGCGg -3'
miRNA:   3'- -CGGUGUCaUGGCG----------AUGGC-GCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.