miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 95427 0.68 0.845923
Target:  5'- cGCCaACAccGCCGCggccagggcgGCCGCGGCGGg- -3'
miRNA:   3'- -CGG-UGUcaUGGCGa---------UGGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 97896 0.66 0.920919
Target:  5'- cGCCGauga--CGCUGCCGCGACuGugAu -3'
miRNA:   3'- -CGGUgucaugGCGAUGGCGCUG-CugU- -5'
5855 5' -55.5 NC_001806.1 + 99230 0.67 0.896783
Target:  5'- aGCCACccacGCCGCcucggcCCGCGaACGGCAc -3'
miRNA:   3'- -CGGUGuca-UGGCGau----GGCGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 99278 0.69 0.803714
Target:  5'- aGCCAC-GUAuCUGacgGCCGaCGACGACGa -3'
miRNA:   3'- -CGGUGuCAU-GGCga-UGGC-GCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 99396 0.66 0.926364
Target:  5'- cCCgACAGgcgACCGC--CgGCGGCGACGu -3'
miRNA:   3'- cGG-UGUCa--UGGCGauGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 100461 0.66 0.915237
Target:  5'- gGCCA-AGUacGCCGCcACCGUGGcCGGCc -3'
miRNA:   3'- -CGGUgUCA--UGGCGaUGGCGCU-GCUGu -5'
5855 5' -55.5 NC_001806.1 + 100680 0.67 0.905656
Target:  5'- cGCCACccaggcgcugggcgaGGUGgaGCUGCC-CGGCGGCc -3'
miRNA:   3'- -CGGUG---------------UCAUggCGAUGGcGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 100966 0.68 0.837837
Target:  5'- uGgCGCGGUGCCugacgccuGCcaaccugauCCGCGGCGACAa -3'
miRNA:   3'- -CgGUGUCAUGG--------CGau-------GGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 107766 0.67 0.896783
Target:  5'- aCCGUGGUGCCGuUUGCCGgGACGGu- -3'
miRNA:   3'- cGGUGUCAUGGC-GAUGGCgCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 107815 0.69 0.812497
Target:  5'- gGCCGCGGgcCCGgcguCCGCGugGAgCAu -3'
miRNA:   3'- -CGGUGUCauGGCgau-GGCGCugCU-GU- -5'
5855 5' -55.5 NC_001806.1 + 109080 0.67 0.90932
Target:  5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3'
miRNA:   3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 109645 0.69 0.829566
Target:  5'- cGCCcugauCA-UACUGC-GCCGCGGCGGCGu -3'
miRNA:   3'- -CGGu----GUcAUGGCGaUGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 111681 0.69 0.794777
Target:  5'- cGCCGCGGguCgGCgugCGCGGCGACAa -3'
miRNA:   3'- -CGGUGUCauGgCGaugGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 116718 0.68 0.868257
Target:  5'- cGCC-CAGcgaGCCGCUcggcgcgcccggcGCCGCGccgaACGACGu -3'
miRNA:   3'- -CGGuGUCa--UGGCGA-------------UGGCGC----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 117731 0.66 0.914656
Target:  5'- -gCGCGGgccggGCCGCUcguaagaGCCGCGAccCGGCc -3'
miRNA:   3'- cgGUGUCa----UGGCGA-------UGGCGCU--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 118502 0.7 0.738402
Target:  5'- gGCgGCGGcUGCgGCgGCUGCGGCGGCc -3'
miRNA:   3'- -CGgUGUC-AUGgCGaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 124989 0.66 0.936541
Target:  5'- gGCCAauCGGcgGCCGCcAgCGCGGCGGg- -3'
miRNA:   3'- -CGGU--GUCa-UGGCGaUgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 127418 0.72 0.617649
Target:  5'- gGCCACGG-GCCGCagcggcaccgUGCUGgCGGCGGCGg -3'
miRNA:   3'- -CGGUGUCaUGGCG----------AUGGC-GCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127493 0.74 0.507709
Target:  5'- cCCGCuGGUGCUGC-GCgGCGACGACGa -3'
miRNA:   3'- cGGUG-UCAUGGCGaUGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127562 0.68 0.861508
Target:  5'- gGCC-CGGUGgCGCggGCCGCGGaggGACu -3'
miRNA:   3'- -CGGuGUCAUgGCGa-UGGCGCUg--CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.