miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 127627 0.66 0.931571
Target:  5'- gGCCugGGcgcGCCGCUGcggcCCGUGuACGugGc -3'
miRNA:   3'- -CGGugUCa--UGGCGAU----GGCGC-UGCugU- -5'
5855 5' -55.5 NC_001806.1 + 127766 0.67 0.896783
Target:  5'- cCCGCgcgAGUACCGCcggGCCGUGcugcCGGCGc -3'
miRNA:   3'- cGGUG---UCAUGGCGa--UGGCGCu---GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127848 0.76 0.451228
Target:  5'- cGCCGCuGcGCCugUGCCGCGGCGGCAa -3'
miRNA:   3'- -CGGUGuCaUGGcgAUGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 128301 0.66 0.915237
Target:  5'- cGCCGgAGUGguCCGCcgAgCGCGGCGGg- -3'
miRNA:   3'- -CGGUgUCAU--GGCGa-UgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 128431 0.7 0.757659
Target:  5'- cGCCuCGGgcCCGCUgcGCCGCauGGCGGCc -3'
miRNA:   3'- -CGGuGUCauGGCGA--UGGCG--CUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 128512 0.76 0.406899
Target:  5'- gGCCGC-GUGCgGCgGCgGCGACGACGa -3'
miRNA:   3'- -CGGUGuCAUGgCGaUGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 128805 0.67 0.876272
Target:  5'- cCCGCGGcGCCccggGCcGCCGCGGCG-CAg -3'
miRNA:   3'- cGGUGUCaUGG----CGaUGGCGCUGCuGU- -5'
5855 5' -55.5 NC_001806.1 + 129108 0.69 0.794777
Target:  5'- uCCGCGGccGCCGCcGCCGCGGaccugcuguuUGACAa -3'
miRNA:   3'- cGGUGUCa-UGGCGaUGGCGCU----------GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 129332 0.66 0.936541
Target:  5'- cCCGCGGgccCCGCUuccccGCCGCGcCGcACGc -3'
miRNA:   3'- cGGUGUCau-GGCGA-----UGGCGCuGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 129512 0.68 0.853815
Target:  5'- cGCCAC---GCCGacGCCGaCGACGACGc -3'
miRNA:   3'- -CGGUGucaUGGCgaUGGC-GCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 129594 0.66 0.926364
Target:  5'- cGCCGCGGggauccucGCCGCc-CUGgGGCGGCu -3'
miRNA:   3'- -CGGUGUCa-------UGGCGauGGCgCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 129648 0.68 0.845923
Target:  5'- cGCCGCcGUcGCCGCcGCCGCaccgGGCGAg- -3'
miRNA:   3'- -CGGUGuCA-UGGCGaUGGCG----CUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 130351 0.71 0.714815
Target:  5'- cGCCGcCGGgcCCGCgcggcgguggccgGCCGCGACGcCAc -3'
miRNA:   3'- -CGGU-GUCauGGCGa------------UGGCGCUGCuGU- -5'
5855 5' -55.5 NC_001806.1 + 139489 0.67 0.89017
Target:  5'- uGCCAgGagacUGCCGCccACCGCGcCGGCGa -3'
miRNA:   3'- -CGGUgUc---AUGGCGa-UGGCGCuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 140108 0.73 0.603394
Target:  5'- uGCCACGGcggggcgacguggGCaCGCggucACCGUGACGACAu -3'
miRNA:   3'- -CGGUGUCa------------UG-GCGa---UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 146667 0.66 0.915237
Target:  5'- cGCCGgGGgcCCGUgGCCGCGGCc--- -3'
miRNA:   3'- -CGGUgUCauGGCGaUGGCGCUGcugu -5'
5855 5' -55.5 NC_001806.1 + 147372 0.7 0.728631
Target:  5'- gGCCAgCAGaGCCaGCUGUCGCGGCGAg- -3'
miRNA:   3'- -CGGU-GUCaUGG-CGAUGGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 147605 0.68 0.837837
Target:  5'- cGCgGCGGcuggGCCgGCgGgCGCGGCGACAg -3'
miRNA:   3'- -CGgUGUCa---UGG-CGaUgGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 147639 0.74 0.546975
Target:  5'- cGCCGaug-GCCGCcaccgGCCGUGACGACGu -3'
miRNA:   3'- -CGGUgucaUGGCGa----UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 147933 0.69 0.821117
Target:  5'- gGCCACc--GCCGCgcggGCC-CGGCGGCGc -3'
miRNA:   3'- -CGGUGucaUGGCGa---UGGcGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.