miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 148058 0.66 0.936541
Target:  5'- gGCCACGGcuccCCGCUGacguacCCGUcGCGAUAg -3'
miRNA:   3'- -CGGUGUCau--GGCGAU------GGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 148244 0.69 0.812497
Target:  5'- aGCCGCGugaucagggcGUACUGCUG-CGCGGCGuCGc -3'
miRNA:   3'- -CGGUGU----------CAUGGCGAUgGCGCUGCuGU- -5'
5855 5' -55.5 NC_001806.1 + 148385 0.66 0.928475
Target:  5'- cGCCACgcugccggugaugaaGGaGCUGCUGuuGCGcGCGGCGc -3'
miRNA:   3'- -CGGUG---------------UCaUGGCGAUggCGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 148638 0.77 0.389948
Target:  5'- cGCC-CGGUGCgGCgGCgGCGACGGCGg -3'
miRNA:   3'- -CGGuGUCAUGgCGaUGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 149078 0.71 0.688811
Target:  5'- gGCCACGGcgGCCucGCUGCCGcCGGCcACGc -3'
miRNA:   3'- -CGGUGUCa-UGG--CGAUGGC-GCUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 149173 0.67 0.89017
Target:  5'- uCCGCGGcgGCgGCgGCCGCGGagcuCGGCAg -3'
miRNA:   3'- cGGUGUCa-UGgCGaUGGCGCU----GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 149264 0.67 0.883332
Target:  5'- gGCgGCGGcgGCCGCcAgCGCGuCGGCGg -3'
miRNA:   3'- -CGgUGUCa-UGGCGaUgGCGCuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 149503 0.73 0.577045
Target:  5'- gGCCACGGggcgcgggcggGCCuGC-GCCGCGGCGGCc -3'
miRNA:   3'- -CGGUGUCa----------UGG-CGaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 150262 0.66 0.936541
Target:  5'- cGCCA-GGUagGCgUGCUGCCGCGACa--- -3'
miRNA:   3'- -CGGUgUCA--UG-GCGAUGGCGCUGcugu -5'
5855 5' -55.5 NC_001806.1 + 150455 0.72 0.638046
Target:  5'- cGCaCGCGGUAgCGCacguUGCCGCcGCGGCAc -3'
miRNA:   3'- -CG-GUGUCAUgGCG----AUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150666 0.67 0.90932
Target:  5'- cGCCAC-GUACaCGg-GCCGCaGCGGCGc -3'
miRNA:   3'- -CGGUGuCAUG-GCgaUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150870 0.7 0.728631
Target:  5'- cGCCagcACGGUGCCGCUGcggcCCGUGGcCGAg- -3'
miRNA:   3'- -CGG---UGUCAUGGCGAU----GGCGCU-GCUgu -5'
5855 5' -55.5 NC_001806.1 + 152258 0.69 0.793875
Target:  5'- cGCCGCc--ACCGCUuuaaaggGCCGCGcGCGACc -3'
miRNA:   3'- -CGGUGucaUGGCGA-------UGGCGC-UGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.