Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 111681 | 0.69 | 0.794777 |
Target: 5'- cGCCGCGGguCgGCgugCGCGGCGACAa -3' miRNA: 3'- -CGGUGUCauGgCGaugGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 109645 | 0.69 | 0.829566 |
Target: 5'- cGCCcugauCA-UACUGC-GCCGCGGCGGCGu -3' miRNA: 3'- -CGGu----GUcAUGGCGaUGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 109080 | 0.67 | 0.90932 |
Target: 5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3' miRNA: 3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 107815 | 0.69 | 0.812497 |
Target: 5'- gGCCGCGGgcCCGgcguCCGCGugGAgCAu -3' miRNA: 3'- -CGGUGUCauGGCgau-GGCGCugCU-GU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 107766 | 0.67 | 0.896783 |
Target: 5'- aCCGUGGUGCCGuUUGCCGgGACGGu- -3' miRNA: 3'- cGGUGUCAUGGC-GAUGGCgCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100966 | 0.68 | 0.837837 |
Target: 5'- uGgCGCGGUGCCugacgccuGCcaaccugauCCGCGGCGACAa -3' miRNA: 3'- -CgGUGUCAUGG--------CGau-------GGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100680 | 0.67 | 0.905656 |
Target: 5'- cGCCACccaggcgcugggcgaGGUGgaGCUGCC-CGGCGGCc -3' miRNA: 3'- -CGGUG---------------UCAUggCGAUGGcGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100461 | 0.66 | 0.915237 |
Target: 5'- gGCCA-AGUacGCCGCcACCGUGGcCGGCc -3' miRNA: 3'- -CGGUgUCA--UGGCGaUGGCGCU-GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 99396 | 0.66 | 0.926364 |
Target: 5'- cCCgACAGgcgACCGC--CgGCGGCGACGu -3' miRNA: 3'- cGG-UGUCa--UGGCGauGgCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 99278 | 0.69 | 0.803714 |
Target: 5'- aGCCAC-GUAuCUGacgGCCGaCGACGACGa -3' miRNA: 3'- -CGGUGuCAU-GGCga-UGGC-GCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 99230 | 0.67 | 0.896783 |
Target: 5'- aGCCACccacGCCGCcucggcCCGCGaACGGCAc -3' miRNA: 3'- -CGGUGuca-UGGCGau----GGCGC-UGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 97896 | 0.66 | 0.920919 |
Target: 5'- cGCCGauga--CGCUGCCGCGACuGugAu -3' miRNA: 3'- -CGGUgucaugGCGAUGGCGCUG-CugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 95427 | 0.68 | 0.845923 |
Target: 5'- cGCCaACAccGCCGCggccagggcgGCCGCGGCGGg- -3' miRNA: 3'- -CGG-UGUcaUGGCGa---------UGGCGCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 93877 | 0.72 | 0.638046 |
Target: 5'- aCCugGGUGCUGgUGCUG-GACGACAc -3' miRNA: 3'- cGGugUCAUGGCgAUGGCgCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 92236 | 0.66 | 0.931571 |
Target: 5'- aGCCGCGcUGCCGUccGCCGCGcccuCGAa- -3' miRNA: 3'- -CGGUGUcAUGGCGa-UGGCGCu---GCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 91797 | 0.73 | 0.601361 |
Target: 5'- uCCACGGaaaccaggcccccucUGCCGCcgGCCGCcGGCGGCAc -3' miRNA: 3'- cGGUGUC---------------AUGGCGa-UGGCG-CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 89093 | 0.66 | 0.936541 |
Target: 5'- aCCGCAGguugUCGUUGCCGCGGguGCAc -3' miRNA: 3'- cGGUGUCau--GGCGAUGGCGCUgcUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 87384 | 0.67 | 0.90932 |
Target: 5'- gGCCACGGcgggaucgGCCGCaagACCaGCGcCGGCc -3' miRNA: 3'- -CGGUGUCa-------UGGCGa--UGG-CGCuGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 87029 | 0.67 | 0.903167 |
Target: 5'- aCCGCAGaGCgGC-GCCGUGugucGCGACAg -3' miRNA: 3'- cGGUGUCaUGgCGaUGGCGC----UGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 86925 | 0.66 | 0.915237 |
Target: 5'- cGUCugGGUACCGgUagacguccccGCCgaGCGACGugGg -3' miRNA: 3'- -CGGugUCAUGGCgA----------UGG--CGCUGCugU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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