miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 85252 0.66 0.915237
Target:  5'- cCCGC-GUcCCGCgguaguugGCCGUGACGugGg -3'
miRNA:   3'- cGGUGuCAuGGCGa-------UGGCGCUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 84259 0.67 0.899365
Target:  5'- gGCCGCGGgggaucgauaauucGCCGCUcCCuacaGCGcACGACAg -3'
miRNA:   3'- -CGGUGUCa-------------UGGCGAuGG----CGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 83985 0.7 0.776474
Target:  5'- gGCCACGGccaaGCUGCgcGCCGCcauGGCGGCGu -3'
miRNA:   3'- -CGGUGUCa---UGGCGa-UGGCG---CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 83693 0.67 0.90932
Target:  5'- uCCGCcGgcCUGCgcACCGCGGCGGCc -3'
miRNA:   3'- cGGUGuCauGGCGa-UGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 82390 0.66 0.926364
Target:  5'- aGCCACGcccccucuGUccACCug-GCCGCGGCGACc -3'
miRNA:   3'- -CGGUGU--------CA--UGGcgaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 81860 0.67 0.903167
Target:  5'- cGCCAUcGUGCUGCUGCgGCuGC-ACAu -3'
miRNA:   3'- -CGGUGuCAUGGCGAUGgCGcUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 79674 0.74 0.553951
Target:  5'- cGCC-CAGUcGCCGCcACCgacccgggcccgucGCGACGACAg -3'
miRNA:   3'- -CGGuGUCA-UGGCGaUGG--------------CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77779 0.66 0.920919
Target:  5'- cGCCGCAGcucgggucugGCCgaGCUGCgGCGcuuCGACGc -3'
miRNA:   3'- -CGGUGUCa---------UGG--CGAUGgCGCu--GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77600 0.67 0.89017
Target:  5'- gGCCAUGGaUGCCGCcaa-GCuGACGGCAg -3'
miRNA:   3'- -CGGUGUC-AUGGCGauggCG-CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 77091 0.67 0.89017
Target:  5'- cGCCgGCAGcGCCGCcgUCGCaACGGCAg -3'
miRNA:   3'- -CGG-UGUCaUGGCGauGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 76556 0.67 0.896783
Target:  5'- aGCCACG--AgCGCUggGCCGCcGACGugGa -3'
miRNA:   3'- -CGGUGUcaUgGCGA--UGGCG-CUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 74891 0.69 0.829566
Target:  5'- gGCCACAGgccagacgGgCGCgGgCGCGGCGGCc -3'
miRNA:   3'- -CGGUGUCa-------UgGCGaUgGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 74777 0.7 0.757659
Target:  5'- cCCGCAGaUGCUGCgccGCCGgGGCGAg- -3'
miRNA:   3'- cGGUGUC-AUGGCGa--UGGCgCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 74646 0.74 0.517421
Target:  5'- cGCCacuGCAGUACgCGCUcugcuucccgGCCGUGAcCGACAa -3'
miRNA:   3'- -CGG---UGUCAUG-GCGA----------UGGCGCU-GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 73638 0.67 0.903167
Target:  5'- cGCCACcc-ACCGCacccCCGCGGCGcGCGu -3'
miRNA:   3'- -CGGUGucaUGGCGau--GGCGCUGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 70933 0.67 0.896783
Target:  5'- cGCCGCAGgccaaaCGCggGCCGCaaccaGGCGGCc -3'
miRNA:   3'- -CGGUGUCaug---GCGa-UGGCG-----CUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 70317 0.66 0.920919
Target:  5'- cGCCuccCGGgACCGCcggguuCgGCGGCGACGg -3'
miRNA:   3'- -CGGu--GUCaUGGCGau----GgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 68183 0.72 0.668585
Target:  5'- gGCCcCAGcUGCgCGCUGCCGCGGaGGCc -3'
miRNA:   3'- -CGGuGUC-AUG-GCGAUGGCGCUgCUGu -5'
5855 5' -55.5 NC_001806.1 + 66520 0.66 0.926364
Target:  5'- cCUGCGGU-CCGgaGCCGCG-CGGCc -3'
miRNA:   3'- cGGUGUCAuGGCgaUGGCGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 65597 0.7 0.757659
Target:  5'- aGCC-CGGcgGCCGUgagGCCGCGGC-ACAg -3'
miRNA:   3'- -CGGuGUCa-UGGCGa--UGGCGCUGcUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.